ENSMUSG00000029661:+:6:4531237:4532797

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSMUSG00000029661:+:6:4531237:4532797 ENSMUSG00000029661 ENSMUST00000031668 + 6 4531238 4532797 216 GGUGCUGCUGGCCAACCCGGUGCUAAAGGAGAGAAGGGAACCAAAGGGCCUAAGGGUGAAAAUGGCAUUGUUGGUCCAACCGGGUCUGUUGGAGCUGCUGGCCCAUCUGGUCCUAAUGGCCCACCUGGUCCUGUUGGAAGUCGUGGUGAUGGAGGGCCCCCUGGUAUGACUGGCUUCCCUGGUGCUGCUGGACGGACUGGUCCCCCCGGACCCAGUGGUGCUGCUGGCCAACCCGGUGCUAAAGGAGAGAAGGGAACCAAAGGGCC circ
ENSMUSG00000029661:+:6:4531237:4532797 ENSMUSG00000029661 ENSMUST00000031668 + 6 4531238 4532797 22 CCGGACCCAGUGGUGCUGCUGG bsj
ENSMUSG00000029661:+:6:4531237:4532797 ENSMUSG00000029661 ENSMUST00000031668 + 6 4531038 4531247 210 AUUCAUAGUUCAUGGUUUACAGACAUCUGAGAGGCUGUGAGUGUGAUGUCUUUAUCUCCCACCUAGGGUGAACGUGGUGAAGUUGGCCCUGCUGGCCCCAAUGGAUUUGCUGGUCCUGCUGUGAGUAUCAUAUUAAGGGAGAUUAAGAUGACAUCACAGUGAGUCAGAAGGCCAGUGCUCACUGCUGUUUCUUCCAACAGGGUGCUGCUG ie_up
ENSMUSG00000029661:+:6:4531237:4532797 ENSMUSG00000029661 ENSMUST00000031668 + 6 4532788 4532997 210 CGGACCCAGUGUGAGUACAUCAUUCCCAGUAUAACUCCAUUUACUCUCACCAGAAGGCCAGGCCUCUGGUAGGAAAUUAGGGGAGAACAUAUCUAUUUAAACAAAUUAUUAAUAUUUGCUAGUACUCUCCUGAGUUAAAAUUAUCUUUGAUGAAUGAUUAAGACAAAAGUCAUUGCAAAUUUUAUUUUAAAAUAUCAAUCUAAGUACUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
    • Please Click HERE to learn more details about the results from circRNAprofiler.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
EIF4B 3 55 0.018518519 0.0015211191 3.605764 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBFOX2 1 29 0.009259259 0.0008148852 3.506228 UGACUG UGACUG,UGCAUG
SAMD4A 11 196 0.055555556 0.0053510797 3.376029 CGGGUC,CUGGAC,CUGGCC,CUGGUA,CUGGUC,GCUGGA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
ZNF638 4 85 0.023148148 0.0023360043 3.308782 GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPU 1 53 0.009259259 0.0014667934 2.658231 CCCCCC AAAAAA,CCCCCC,GGGGGG,UUUUUU
ZRANB2 5 189 0.027777778 0.0051609398 2.428225 AGGGAA,GGGUGA,GUGGUG,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBFOX1 1 68 0.009259259 0.0018742360 2.304594 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ACO1 1 78 0.009259259 0.0021458645 2.109338 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF6 3 165 0.018518519 0.0045090316 2.038079 GUGAUG,GUGGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPK 8 389 0.041666667 0.0105935081 1.975713 CAACCC,CCAACC,CCCCCC,CCCCCU,GCCCAC,GCCCCC,UCCCCC AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
HNRNPA3 1 99 0.009259259 0.0027162841 1.769262 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
FUS 2 155 0.013888889 0.0042374032 1.712679 GGGUGA,UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
RBM5 5 324 0.027777778 0.0088279234 1.653785 AAGGAG,AGGGAA,AGGGUG,CCCCCC,GAAGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
LIN28A 3 220 0.018518519 0.0060029879 1.625216 AGGAGA,GGAGGG,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
PABPC5 1 110 0.009259259 0.0030150754 1.618703 GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CELF2 1 116 0.009259259 0.0031780524 1.542754 GUCUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
NELFE 2 179 0.013888889 0.0048893114 1.506228 CUGGCU,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
MBNL1 11 740 0.055555556 0.0201276654 1.464751 CUGCUG,GCUGCU,GUGCUA,GUGCUG,UGCUGC ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
FXR2 2 185 0.013888889 0.0050522885 1.458922 GACGGA,GGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
YTHDC1 4 309 0.023148148 0.0084204808 1.458922 UGCUGC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
SFPQ 17 1262 0.083333333 0.0343066685 1.280405 AAGGGA,CUAAGG,GACUGG,GGACUG,GGAGAG,GGAGGG,GGUCUG,GUGAUG,GUGGUG,UAAGGG,UAAUGG,UGAUGG,UGGAAG,UGGAGC,UGGAGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
SF1 3 288 0.018518519 0.0078500611 1.238193 UGCUAA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
PCBP1 8 683 0.041666667 0.0185793834 1.165191 AACCAA,ACCAAA,CAACCC,CCAACC,CCCACC,CCCCCC,CUUCCC AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPH3 4 386 0.023148148 0.0105120196 1.138857 AAGGGA,AGGGAA,GAAGGG,GGAGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU

RBP on BSJ (Exon Only)

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Spreadsheet

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RBP on BSJ (Exon and Intron)

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Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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