ENSMUSG00000024330

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000131134 ENSMUSG00000024330 Control shVgll3 Col11a2 protein_coding protein_coding 227.4976 271.3721 183.6232 3.768253 10.90053 -0.5634987 18.533358 33.42265 3.644066 1.0062345 0.6639892 -3.1936830 0.07141667 0.12310000 0.01973333 -0.103366667 7.898599e-24 1.98733e-67 FALSE TRUE
ENSMUST00000144927 ENSMUSG00000024330 Control shVgll3 Col11a2 protein_coding retained_intron 227.4976 271.3721 183.6232 3.768253 10.90053 -0.5634987 83.456785 99.02438 67.889191 1.6704695 3.5434786 -0.5445351 0.36781667 0.36510000 0.37053333 0.005433333 1.000000e+00 1.98733e-67 FALSE FALSE
ENSMUST00000237989 ENSMUSG00000024330 Control shVgll3 Col11a2 protein_coding protein_coding 227.4976 271.3721 183.6232 3.768253 10.90053 -0.5634987 38.462918 48.19786 28.727973 2.6903925 2.0704000 -0.7463102 0.16690000 0.17753333 0.15626667 -0.021266667 8.132097e-01 1.98733e-67 FALSE TRUE
MSTRG.10038.15 ENSMUSG00000024330 Control shVgll3 Col11a2 protein_coding   227.4976 271.3721 183.6232 3.768253 10.90053 -0.5634987 9.741764 0.00000 19.483528 0.0000000 1.0960201 10.9287795 0.05361667 0.00000000 0.10723333 0.107233333 7.870030e-67 1.98733e-67 FALSE TRUE
MSTRG.10038.6 ENSMUSG00000024330 Control shVgll3 Col11a2 protein_coding   227.4976 271.3721 183.6232 3.768253 10.90053 -0.5634987 16.263086 23.60061 8.925559 0.9912204 2.0602233 -1.4018055 0.06728333 0.08693333 0.04763333 -0.039300000 3.286950e-01 1.98733e-67 FALSE TRUE
MSTRG.10038.9 ENSMUSG00000024330 Control shVgll3 Col11a2 protein_coding   227.4976 271.3721 183.6232 3.768253 10.90053 -0.5634987 7.519407 0.00000 15.038815 0.0000000 0.9635823 10.5554341 0.04125000 0.00000000 0.08250000 0.082500000 1.987330e-67 1.98733e-67 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000024330 E001 3.474630 8.101973e-02 6.395859e-01 9.566871e-01 17 34258012 34258137 126 + 0.587 0.673 0.375
ENSMUSG00000024330 E002 7.731673 4.040545e-02 1.893833e-01 7.658913e-01 17 34258138 34258168 31 + 0.800 1.001 0.764
ENSMUSG00000024330 E003 37.082816 9.386568e-03 1.226833e-02 2.419669e-01 17 34258169 34258329 161 + 1.446 1.638 0.655
ENSMUSG00000024330 E004 9.847654 3.194233e-02 8.223088e-01 9.841109e-01 17 34258330 34258410 81 + 1.016 1.034 0.066
ENSMUSG00000024330 E005 11.530138 4.785966e-03 9.148568e-01 9.975128e-01 17 34258411 34258445 35 + 1.095 1.084 -0.038
ENSMUSG00000024330 E006 273.100936 2.906376e-03 3.218485e-02 4.044257e-01 17 34258446 34258594 149 + 2.382 2.455 0.244
ENSMUSG00000024330 E007 167.414833 1.779394e-03 6.006438e-02 5.310908e-01 17 34258595 34258628 34 + 2.176 2.241 0.217
ENSMUSG00000024330 E008 313.490579 5.632478e-04 9.184606e-03 2.055706e-01 17 34258629 34258710 82 + 2.450 2.511 0.202
ENSMUSG00000024330 E009 2.145385 1.064751e-02 3.025915e-01 8.435613e-01 17 34259818 34259864 47 + 0.587 0.413 -0.846
ENSMUSG00000024330 E010 42.439096 7.109335e-04 3.028856e-08 6.442101e-06 17 34259865 34260324 460 + 1.786 1.483 -1.029
ENSMUSG00000024330 E011 604.197793 2.268998e-04 1.649597e-01 7.384747e-01 17 34261134 34261283 150 + 2.759 2.781 0.075
ENSMUSG00000024330 E012 810.770880 7.229069e-05 1.465973e-02 2.730726e-01 17 34261375 34261585 211 + 2.880 2.912 0.108
ENSMUSG00000024330 E013 699.561857 5.633876e-04 7.269539e-02 5.796801e-01 17 34262208 34262370 163 + 2.816 2.848 0.108
ENSMUSG00000024330 E014 978.854734 5.131923e-04 2.828531e-02 3.781503e-01 17 34263793 34263984 192 + 2.960 2.995 0.114
ENSMUSG00000024330 E015 329.036300 9.895400e-05 9.539323e-01 1.000000e+00 17 34264745 34264822 78 + 2.510 2.508 -0.004
ENSMUSG00000024330 E016 154.942625 1.521698e-04 8.156060e-07 1.192620e-04 17 34264823 34264963 141 + 2.264 2.121 -0.476
ENSMUSG00000024330 E017 444.359411 1.067582e-04 3.287487e-80 1.281901e-76 17 34264964 34265215 252 + 2.808 2.478 -1.099
ENSMUSG00000024330 E018 198.217035 2.113779e-03 1.307449e-11 5.273979e-09 17 34265216 34265413 198 + 2.413 2.185 -0.760
ENSMUSG00000024330 E019 227.426754 1.820504e-03 2.826033e-01 8.289604e-01 17 34265414 34265476 63 + 2.369 2.335 -0.114
ENSMUSG00000024330 E020 461.656294 1.019532e-04 5.946927e-47 7.729684e-44 17 34265477 34266071 595 + 2.787 2.542 -0.816
ENSMUSG00000024330 E021 394.308862 1.238349e-04 2.951016e-09 7.845677e-07 17 34266072 34266251 180 + 2.514 2.629 0.380
ENSMUSG00000024330 E022 94.216114 7.798902e-03 5.247651e-07 8.184937e-05 17 34267254 34267599 346 + 2.117 1.836 -0.943
ENSMUSG00000024330 E023 276.674349 1.257224e-04 5.805873e-03 1.586848e-01 17 34268593 34268652 60 + 2.395 2.457 0.206
ENSMUSG00000024330 E024 182.246710 5.866885e-03 4.979583e-01 9.275663e-01 17 34268768 34268809 42 + 2.237 2.263 0.086
ENSMUSG00000024330 E025 239.854769 3.920605e-03 4.943108e-01 9.267463e-01 17 34269020 34269082 63 + 2.390 2.360 -0.099
ENSMUSG00000024330 E026 317.163250 2.344010e-04 2.324262e-01 8.037828e-01 17 34269396 34269470 75 + 2.508 2.483 -0.086
ENSMUSG00000024330 E027 7.245370 3.287836e-03 5.145568e-04 2.880041e-02 17 34269889 34269930 42 + 1.109 0.697 -1.574
ENSMUSG00000024330 E028 351.121066 1.395787e-04 1.314554e-01 6.881868e-01 17 34269931 34270017 87 + 2.518 2.549 0.101
ENSMUSG00000024330 E029 270.597239 1.758392e-04 9.595785e-01 1.000000e+00 17 34270236 34270292 57 + 2.425 2.424 -0.004
ENSMUSG00000024330 E030 273.922518 1.383623e-03 3.505825e-01 8.751770e-01 17 34270454 34270507 54 + 2.446 2.418 -0.092
ENSMUSG00000024330 E031 254.022855 1.333158e-04 6.747678e-01 9.616426e-01 17 34270588 34270641 54 + 2.391 2.401 0.032
ENSMUSG00000024330 E032 366.573926 6.254353e-04 3.244486e-01 8.586349e-01 17 34270727 34270780 54 + 2.568 2.547 -0.073
ENSMUSG00000024330 E033 0.000000       17 34270781 34270781 1 +      
ENSMUSG00000024330 E034 407.145059 6.383591e-04 6.886426e-01 9.629190e-01 17 34270925 34270978 54 + 2.595 2.604 0.030
ENSMUSG00000024330 E035 403.618905 8.210731e-04 1.777169e-01 7.567762e-01 17 34271139 34271192 54 + 2.578 2.609 0.103
ENSMUSG00000024330 E036 1.968610 5.287721e-02 9.036112e-01 9.956323e-01 17 34271281 34271285 5 + 0.483 0.456 -0.135
ENSMUSG00000024330 E037 364.283836 1.153377e-04 3.678895e-01 8.754022e-01 17 34271286 34271330 45 + 2.542 2.560 0.058
ENSMUSG00000024330 E038 305.089748 1.603551e-04 1.881810e-01 7.658913e-01 17 34271438 34271491 54 + 2.459 2.487 0.094
ENSMUSG00000024330 E039 387.410774 1.511193e-04 7.227207e-01 9.706108e-01 17 34271915 34271959 45 + 2.576 2.582 0.023
ENSMUSG00000024330 E040 432.220186 3.468799e-04 7.669967e-01 9.779907e-01 17 34272168 34272221 54 + 2.631 2.625 -0.020
ENSMUSG00000024330 E041 291.366588 1.205254e-04 3.822474e-01 8.831780e-01 17 34272387 34272431 45 + 2.467 2.449 -0.063
ENSMUSG00000024330 E042 383.778118 2.180820e-03 2.496777e-01 8.055355e-01 17 34272550 34272603 54 + 2.595 2.562 -0.108
ENSMUSG00000024330 E043 428.065797 1.534776e-03 6.214347e-01 9.551420e-01 17 34272847 34272891 45 + 2.629 2.618 -0.038
ENSMUSG00000024330 E044 455.014033 9.772908e-05 2.457680e-03 8.928554e-02 17 34273124 34273177 54 + 2.616 2.669 0.178
ENSMUSG00000024330 E045 419.425477 9.996220e-05 4.585269e-04 2.681924e-02 17 34273279 34273323 45 + 2.574 2.638 0.214
ENSMUSG00000024330 E046 382.726452 6.563521e-04 2.701911e-02 3.692402e-01 17 34273811 34273864 54 + 2.544 2.593 0.164
ENSMUSG00000024330 E047 4.112279 8.621314e-02 2.134348e-01 7.861337e-01 17 34274055 34274191 137 + 0.827 0.593 -0.970
ENSMUSG00000024330 E048 431.742306 5.801197e-04 2.313957e-01 8.037828e-01 17 34274192 34274299 108 + 2.612 2.636 0.081
ENSMUSG00000024330 E049 304.846588 1.028873e-03 6.767843e-01 9.616426e-01 17 34275026 34275079 54 + 2.470 2.480 0.034
ENSMUSG00000024330 E050 435.133375 3.615240e-04 5.953211e-01 9.516577e-01 17 34275367 34275420 54 + 2.624 2.634 0.034
ENSMUSG00000024330 E051 495.355016 9.120463e-05 1.984591e-01 7.740172e-01 17 34275519 34275563 45 + 2.699 2.677 -0.072
ENSMUSG00000024330 E052 553.457827 9.057777e-05 9.127119e-01 9.972823e-01 17 34275892 34275945 54 + 2.733 2.735 0.005
ENSMUSG00000024330 E053 331.888067 2.399535e-04 1.693319e-01 7.479066e-01 17 34276079 34276123 45 + 2.494 2.524 0.098
ENSMUSG00000024330 E054 410.506375 8.734593e-04 9.889684e-01 1.000000e+00 17 34276225 34276278 54 + 2.605 2.604 -0.004
ENSMUSG00000024330 E055 419.972250 2.131562e-03 5.347940e-01 9.366028e-01 17 34276374 34276427 54 + 2.604 2.621 0.058
ENSMUSG00000024330 E056 335.054355 1.021086e-04 1.289963e-01 6.840630e-01 17 34276594 34276647 54 + 2.498 2.529 0.102
ENSMUSG00000024330 E057 430.311594 9.567236e-05 2.394165e-01 8.044216e-01 17 34277024 34277131 108 + 2.612 2.633 0.070
ENSMUSG00000024330 E058 385.038808 1.131577e-04 2.472539e-01 8.044216e-01 17 34277252 34277341 90 + 2.590 2.568 -0.073
ENSMUSG00000024330 E059 282.354848 2.105241e-04 9.258903e-01 9.993033e-01 17 34277530 34277583 54 + 2.444 2.442 -0.007
ENSMUSG00000024330 E060 533.861248 1.651981e-03 8.588728e-01 9.888424e-01 17 34277799 34277906 108 + 2.716 2.720 0.014
ENSMUSG00000024330 E061 597.194353 8.384155e-05 5.060782e-01 9.302486e-01 17 34278039 34278146 108 + 2.773 2.763 -0.034
ENSMUSG00000024330 E062 389.891626 2.341763e-03 1.571648e-01 7.259887e-01 17 34278267 34278320 54 + 2.555 2.599 0.148
ENSMUSG00000024330 E063 339.382127 1.109519e-04 7.858664e-03 1.944692e-01 17 34278444 34278497 54 + 2.489 2.543 0.180
ENSMUSG00000024330 E064 520.674001 8.235358e-04 6.080129e-01 9.533477e-01 17 34278653 34278760 108 + 2.702 2.712 0.033
ENSMUSG00000024330 E065 329.804059 1.122605e-04 6.323740e-01 9.563245e-01 17 34278905 34278958 54 + 2.516 2.506 -0.032
ENSMUSG00000024330 E066 293.203065 1.105952e-04 4.243993e-01 9.054504e-01 17 34279176 34279229 54 + 2.448 2.466 0.057
ENSMUSG00000024330 E067 376.589945 3.350554e-04 5.747323e-02 5.234760e-01 17 34279373 34279426 54 + 2.543 2.582 0.130
ENSMUSG00000024330 E068 449.894979 1.032666e-04 6.891201e-01 9.629190e-01 17 34279553 34279606 54 + 2.640 2.647 0.023
ENSMUSG00000024330 E069 718.367510 1.346012e-04 8.745354e-01 9.907353e-01 17 34279814 34279921 108 + 2.846 2.848 0.008
ENSMUSG00000024330 E070 581.558286 1.558983e-04 3.830925e-01 8.834420e-01 17 34280193 34280246 54 + 2.764 2.750 -0.047
ENSMUSG00000024330 E071 491.943598 1.220690e-03 5.878487e-01 9.512445e-01 17 34280438 34280491 54 + 2.691 2.678 -0.043
ENSMUSG00000024330 E072 374.343437 4.719071e-03 4.820288e-01 9.237281e-01 17 34280583 34280636 54 + 2.580 2.554 -0.086
ENSMUSG00000024330 E073 386.163667 1.135962e-03 4.885529e-01 9.257967e-01 17 34281189 34281242 54 + 2.567 2.585 0.060
ENSMUSG00000024330 E074 2.971504 6.165516e-03 6.652571e-01 9.588455e-01 17 34281395 34281431 37 + 0.630 0.562 -0.301
ENSMUSG00000024330 E075 630.911436 4.770827e-04 9.607231e-01 1.000000e+00 17 34281432 34281539 108 + 2.791 2.791 -0.001
ENSMUSG00000024330 E076 538.527459 3.076264e-04 7.718251e-01 9.779907e-01 17 34281643 34281696 54 + 2.725 2.720 -0.016
ENSMUSG00000024330 E077 734.547856 8.743926e-05 9.750998e-01 1.000000e+00 17 34281813 34281866 54 + 2.857 2.857 -0.001
ENSMUSG00000024330 E078 972.104820 3.639725e-04 2.083057e-01 7.828663e-01 17 34282084 34282191 108 + 2.967 2.985 0.062
ENSMUSG00000024330 E079 503.841725 6.831307e-04 1.834048e-01 7.608225e-01 17 34282380 34282433 54 + 2.676 2.704 0.092
ENSMUSG00000024330 E080 447.719316 1.480079e-04 1.461134e-01 7.114045e-01 17 34282607 34282642 36 + 2.626 2.652 0.087
ENSMUSG00000024330 E081 523.841264 3.831692e-04 5.905499e-01 9.513997e-01 17 34282838 34282891 54 + 2.704 2.714 0.034
ENSMUSG00000024330 E082 1462.757704 6.090476e-04 8.082200e-01 9.830418e-01 17 34282998 34283265 268 + 3.157 3.154 -0.011
ENSMUSG00000024330 E083 636.848546 4.011354e-04 6.122652e-02 5.369024e-01 17 34283705 34283817 113 + 2.775 2.808 0.110
ENSMUSG00000024330 E084 1007.401660 3.619964e-04 7.523515e-01 9.755052e-01 17 34283980 34284186 207 + 2.996 2.992 -0.014
ENSMUSG00000024330 E085 3460.306217 6.086998e-04 6.654870e-01 9.588455e-01 17 34284642 34285659 1018 + 3.532 3.528 -0.014

Help

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