ENSMUSG00000030982

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000106553 ENSMUSG00000030982 Control shVgll3 Vps35l protein_coding protein_coding 26.01093 26.59916 25.42269 0.8188912 0.8069675 -0.06523881 6.554083 6.214225 6.893940 0.38838632 0.2636475 0.1495258 0.2521500 0.2332333 0.27106667 0.03783333 0.70861361 0.01416268 FALSE TRUE
ENSMUST00000129334 ENSMUSG00000030982 Control shVgll3 Vps35l protein_coding protein_coding_CDS_not_defined 26.01093 26.59916 25.42269 0.8188912 0.8069675 -0.06523881 3.395039 3.944417 2.845661 0.08214146 0.3664474 -0.4696404 0.1301000 0.1486333 0.11156667 -0.03706667 0.66873267 0.01416268 FALSE TRUE
ENSMUST00000149749 ENSMUSG00000030982 Control shVgll3 Vps35l protein_coding protein_coding 26.01093 26.59916 25.42269 0.8188912 0.8069675 -0.06523881 10.203811 9.758703 10.648919 0.19362615 0.2087173 0.1258221 0.3931833 0.3671333 0.41923333 0.05210000 0.61515825 0.01416268 FALSE FALSE
ENSMUST00000176197 ENSMUSG00000030982 Control shVgll3 Vps35l protein_coding retained_intron 26.01093 26.59916 25.42269 0.8188912 0.8069675 -0.06523881 3.137733 4.688980 1.586486 0.52386345 0.3246152 -1.5574477 0.1194333 0.1755333 0.06333333 -0.11220000 0.01416268 0.01416268 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000030982 E001 0.0000000       7 118339449 118339954 506 +      
ENSMUSG00000030982 E002 0.0000000       7 118339955 118339969 15 +      
ENSMUSG00000030982 E003 0.0000000       7 118339970 118339971 2 +      
ENSMUSG00000030982 E004 0.0000000       7 118339972 118339998 27 +      
ENSMUSG00000030982 E005 7.0492922 0.0318168610 1.993888e-01 0.775157842 7 118342818 118342832 15 + 0.989 0.802 -0.711
ENSMUSG00000030982 E006 33.8745003 0.0243962691 3.735167e-01 0.878346676 7 118342833 118342917 85 + 1.583 1.496 -0.297
ENSMUSG00000030982 E007 85.5786521 0.0042127069 5.901231e-01 0.951399702 7 118345598 118345765 168 + 1.925 1.950 0.085
ENSMUSG00000030982 E008 0.6636336 0.3675120646 9.879294e-01   7 118345766 118347188 1423 + 0.217 0.222 0.042
ENSMUSG00000030982 E009 51.4815113 0.0032412922 9.315061e-01 0.999303308 7 118347349 118347419 71 + 1.718 1.722 0.014
ENSMUSG00000030982 E010 35.5157531 0.0005921299 9.408979e-01 0.999693321 7 118347420 118347471 52 + 1.561 1.565 0.015
ENSMUSG00000030982 E011 13.8052008 0.0014102992 4.648549e-01 0.918643970 7 118348890 118348914 25 + 1.202 1.136 -0.234
ENSMUSG00000030982 E012 1.9768059 0.1375915101 5.857648e-01 0.950385100 7 118351418 118351885 468 + 0.419 0.523 0.522
ENSMUSG00000030982 E013 0.8307393 0.0867812643 2.072337e-01 0.782006238 7 118351886 118352039 154 + 0.361 0.125 -1.960
ENSMUSG00000030982 E014 29.4483608 0.0006211769 7.415415e-01 0.972900143 7 118352040 118352116 77 + 1.494 1.473 -0.071
ENSMUSG00000030982 E015 1.4771913 0.0110002949 7.751199e-01 0.978456145 7 118352117 118353028 912 + 0.419 0.368 -0.280
ENSMUSG00000030982 E016 47.1728251 0.0130141535 6.233589e-01 0.955141978 7 118353029 118353157 129 + 1.664 1.700 0.122
ENSMUSG00000030982 E017 0.1615462 0.0344910748 4.737071e-01   7 118353158 118354805 1648 + 0.000 0.125 10.477
ENSMUSG00000030982 E018 34.2513560 0.0006088694 8.386023e-01 0.986771512 7 118359384 118359468 85 + 1.541 1.553 0.042
ENSMUSG00000030982 E019 8.3947856 0.0021720293 4.719250e-02 0.479633199 7 118360989 118361369 381 + 1.068 0.846 -0.833
ENSMUSG00000030982 E020 0.8259960 0.0172504073 6.806215e-01 0.962796900 7 118363347 118363919 573 + 0.295 0.222 -0.543
ENSMUSG00000030982 E021 27.6839435 0.0008701197 6.277569e-01 0.955687174 7 118365588 118365647 60 + 1.441 1.473 0.110
ENSMUSG00000030982 E022 0.1613534 0.0342096158 4.994419e-01   7 118365648 118365767 120 + 0.122 0.000 -10.391
ENSMUSG00000030982 E023 39.4701157 0.0006816325 8.279642e-01 0.985483953 7 118372244 118372340 97 + 1.601 1.613 0.042
ENSMUSG00000030982 E024 41.1138724 0.0124201318 8.745124e-01 0.990735323 7 118373223 118373270 48 + 1.618 1.631 0.043
ENSMUSG00000030982 E025 61.4725059 0.0133238985 7.263106e-01 0.971073563 7 118374515 118374608 94 + 1.810 1.781 -0.096
ENSMUSG00000030982 E026 48.2878840 0.0123887053 8.759336e-01 0.990735323 7 118378911 118378988 78 + 1.690 1.697 0.024
ENSMUSG00000030982 E027 59.4125295 0.0003365636 4.656601e-01 0.918643970 7 118379400 118379522 123 + 1.797 1.764 -0.110
ENSMUSG00000030982 E028 0.4938330 0.0226582864 5.835690e-01   7 118382978 118383278 301 + 0.217 0.125 -0.958
ENSMUSG00000030982 E029 29.4722646 0.0006453093 9.735612e-01 1.000000000 7 118389233 118389279 47 + 1.485 1.483 -0.007
ENSMUSG00000030982 E030 37.5546043 0.0044053945 8.421871e-01 0.986771512 7 118390591 118390702 112 + 1.580 1.592 0.041
ENSMUSG00000030982 E031 52.8561170 0.0003762966 5.610509e-01 0.941366062 7 118391785 118391901 117 + 1.744 1.717 -0.093
ENSMUSG00000030982 E032 33.7404067 0.0009822084 4.982474e-01 0.927686547 7 118393765 118393799 35 + 1.520 1.561 0.140
ENSMUSG00000030982 E033 24.5011885 0.0052730891 6.006963e-01 0.952588052 7 118393800 118393818 19 + 1.387 1.426 0.138
ENSMUSG00000030982 E034 67.4442573 0.0003144886 3.268263e-01 0.861405457 7 118396189 118396269 81 + 1.814 1.856 0.140
ENSMUSG00000030982 E035 38.1364491 0.0005197335 8.612488e-01 0.988842437 7 118399661 118399723 63 + 1.598 1.588 -0.033
ENSMUSG00000030982 E036 51.8656749 0.0003725217 7.584159e-01 0.977065704 7 118400484 118400569 86 + 1.715 1.730 0.051
ENSMUSG00000030982 E037 57.4455348 0.0003276414 3.197441e-02 0.403056768 7 118403327 118403407 81 + 1.812 1.714 -0.333
ENSMUSG00000030982 E038 0.1613534 0.0342096158 4.994419e-01   7 118406055 118406213 159 + 0.122 0.000 -10.391
ENSMUSG00000030982 E039 49.2321236 0.0009275504 2.432962e-01 0.804421628 7 118406214 118406277 64 + 1.729 1.670 -0.200
ENSMUSG00000030982 E040 60.5763747 0.0055138512 7.649548e-01 0.977990679 7 118409101 118409199 99 + 1.781 1.798 0.058
ENSMUSG00000030982 E041 67.3377619 0.0033958779 4.207698e-02 0.460445793 7 118411028 118411105 78 + 1.781 1.884 0.347
ENSMUSG00000030982 E042 81.7002923 0.0004608702 7.368185e-05 0.005865816 7 118412753 118412867 115 + 1.833 1.989 0.523
ENSMUSG00000030982 E043 0.0000000       7 118420846 118420945 100 +      
ENSMUSG00000030982 E044 0.0000000       7 118423798 118423944 147 +      
ENSMUSG00000030982 E045 0.0000000       7 118424927 118425406 480 +      
ENSMUSG00000030982 E046 63.0803123 0.0003345495 2.122669e-01 0.784301317 7 118425407 118425546 140 + 1.778 1.833 0.185
ENSMUSG00000030982 E047 1.9554992 0.2044087491 8.556400e-01 0.988672713 7 118425547 118428107 2561 + 0.513 0.426 -0.437
ENSMUSG00000030982 E048 76.3861269 0.0006402858 7.378483e-01 0.972900143 7 118432925 118433090 166 + 1.895 1.881 -0.046
ENSMUSG00000030982 E049 2.3105362 0.0120710740 9.606304e-01 1.000000000 7 118433091 118433214 124 + 0.515 0.523 0.042
ENSMUSG00000030982 E050 75.5637819 0.0002686322 4.531566e-03 0.133191602 7 118437336 118437454 119 + 1.936 1.822 -0.383
ENSMUSG00000030982 E051 109.9601252 0.0016416526 4.719849e-01 0.921114433 7 118439778 118439924 147 + 2.058 2.031 -0.088
ENSMUSG00000030982 E052 100.0607893 0.0002315107 6.423608e-01 0.956687053 7 118440419 118442189 1771 + 2.012 1.996 -0.053

Help

Please Click HERE to learn more details about the results from DEXseq.