ENSMUSG00000031708

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000019382 ENSMUSG00000031708 Control shVgll3 Tecr protein_coding protein_coding 225.5145 249.2764 201.7525 9.657488 10.43568 -0.3051459 93.90580 115.01383 72.79776 1.742076 3.507208 -0.65976853 0.41206667 0.46316667 0.3609667 -0.102200000 0.04760594 0.04760594 FALSE TRUE
ENSMUST00000212136 ENSMUSG00000031708 Control shVgll3 Tecr protein_coding protein_coding_CDS_not_defined 225.5145 249.2764 201.7525 9.657488 10.43568 -0.3051459 23.41911 26.48786 20.35037 2.423865 1.119927 -0.38011205 0.10401667 0.10703333 0.1010000 -0.006033333 0.99704618 0.04760594 TRUE FALSE
ENSMUST00000212630 ENSMUSG00000031708 Control shVgll3 Tecr protein_coding protein_coding 225.5145 249.2764 201.7525 9.657488 10.43568 -0.3051459 17.83254 8.65234 27.01274 8.652340 5.136946 1.64134537 0.08213333 0.03223333 0.1320333 0.099800000 0.48417356 0.04760594 FALSE FALSE
ENSMUST00000212990 ENSMUSG00000031708 Control shVgll3 Tecr protein_coding protein_coding 225.5145 249.2764 201.7525 9.657488 10.43568 -0.3051459 57.20863 58.94467 55.47260 5.971082 3.233687 -0.08757071 0.25523333 0.23566667 0.2748000 0.039133333 0.79364849 0.04760594 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000031708 E001 2.7844223 0.0087131407 0.3074766036 0.84705901 8 84298327 84298328 2 - 0.470 0.637 0.773
ENSMUSG00000031708 E002 9.3705006 0.0019976695 0.9428981063 0.99989937 8 84298329 84298333 5 - 1.015 1.007 -0.030
ENSMUSG00000031708 E003 690.5804009 0.0005509404 0.6456554387 0.95668705 8 84298334 84298486 153 - 2.839 2.830 -0.028
ENSMUSG00000031708 E004 307.8988749 0.0007534937 0.3619689699 0.87535004 8 84298487 84298532 46 - 2.497 2.474 -0.074
ENSMUSG00000031708 E005 103.1278025 0.0041682374 0.3275885608 0.86191919 8 84298533 84298564 32 - 2.038 1.992 -0.153
ENSMUSG00000031708 E006 7.5677249 0.0026233516 0.5878421064 0.95124454 8 84298565 84298630 66 - 0.963 0.900 -0.238
ENSMUSG00000031708 E007 5.0996433 0.0211072672 0.9665014427 1.00000000 8 84298631 84298641 11 - 0.783 0.778 -0.022
ENSMUSG00000031708 E008 53.4509943 0.0003473255 0.1373907730 0.69936522 8 84298642 84298657 16 - 1.686 1.759 0.245
ENSMUSG00000031708 E009 131.8617806 0.0001897318 0.6748208686 0.96164256 8 84298658 84298687 30 - 2.110 2.123 0.041
ENSMUSG00000031708 E010 462.6225115 0.0001129605 0.4868640689 0.92579672 8 84298861 84298949 89 - 2.667 2.655 -0.041
ENSMUSG00000031708 E011 353.9229310 0.0001177487 0.6162696815 0.95421876 8 84299027 84299084 58 - 2.550 2.540 -0.034
ENSMUSG00000031708 E012 27.6637145 0.0006801625 0.0126793573 0.24638392 8 84299085 84299177 93 - 1.344 1.514 0.588
ENSMUSG00000031708 E013 165.2072254 0.0007925188 0.6021457225 0.95290864 8 84299178 84299221 44 - 2.205 2.221 0.051
ENSMUSG00000031708 E014 3.2974053 0.0061983080 0.2916672934 0.83781095 8 84299222 84299240 19 - 0.524 0.689 0.733
ENSMUSG00000031708 E015 7.2412481 0.0044134239 0.1937181484 0.76956650 8 84299292 84299309 18 - 0.810 0.970 0.610
ENSMUSG00000031708 E016 76.3307612 0.0002693249 0.0731510847 0.58038593 8 84299310 84299310 1 - 1.838 1.911 0.247
ENSMUSG00000031708 E017 382.2685281 0.0008673982 0.0158183982 0.28211964 8 84299311 84299382 72 - 2.545 2.599 0.179
ENSMUSG00000031708 E018 513.7904548 0.0001071020 0.6595713502 0.95774869 8 84299470 84299550 81 - 2.702 2.708 0.021
ENSMUSG00000031708 E019 230.7196102 0.0001490926 0.3948203725 0.88763883 8 84299551 84299575 25 - 2.371 2.350 -0.069
ENSMUSG00000031708 E020 13.9802281 0.0270241171 0.7870026307 0.98017768 8 84299576 84299656 81 - 1.189 1.156 -0.117
ENSMUSG00000031708 E021 186.7038336 0.0015496446 0.3532565711 0.87517695 8 84299657 84299674 18 - 2.250 2.280 0.097
ENSMUSG00000031708 E022 255.2689327 0.0001481573 0.0733023038 0.58038593 8 84299675 84299727 53 - 2.379 2.419 0.133
ENSMUSG00000031708 E023 315.2239658 0.0001147413 0.3730751837 0.87811539 8 84299728 84299772 45 - 2.505 2.486 -0.062
ENSMUSG00000031708 E024 31.5794553 0.0006564365 0.0619313729 0.54105541 8 84299773 84299848 76 - 1.571 1.455 -0.400
ENSMUSG00000031708 E025 347.1294207 0.0006330039 0.6040815750 0.95302157 8 84299849 84299917 69 - 2.543 2.531 -0.040
ENSMUSG00000031708 E026 130.4906427 0.0028666208 0.9067935092 0.99563225 8 84299918 84299922 5 - 2.110 2.115 0.015
ENSMUSG00000031708 E027 182.2767410 0.0011560653 0.7822894121 0.97903220 8 84299923 84299952 30 - 2.252 2.260 0.026
ENSMUSG00000031708 E028 4.6187733 0.0041520445 0.2121976689 0.78430132 8 84299998 84300039 42 - 0.836 0.664 -0.696
ENSMUSG00000031708 E029 230.0079538 0.0001447654 0.6093451669 0.95334770 8 84300040 84300084 45 - 2.365 2.352 -0.043
ENSMUSG00000031708 E030 42.6169775 0.0010024826 0.9804649519 1.00000000 8 84300085 84300337 253 - 1.635 1.633 -0.006
ENSMUSG00000031708 E031 46.1962407 0.0009029792 0.2928248431 0.83781095 8 84300338 84300499 162 - 1.635 1.691 0.190
ENSMUSG00000031708 E032 138.1350826 0.0001992419 0.3256756496 0.86009064 8 84300500 84300547 48 - 2.155 2.124 -0.103
ENSMUSG00000031708 E033 0.9830019 0.0163083148 0.6809043214 0.96279690 8 84300548 84300551 4 - 0.250 0.324 0.510
ENSMUSG00000031708 E034 3.9375111 0.0049078394 0.0096242170 0.21282437 8 84301107 84301157 51 - 0.408 0.816 1.832
ENSMUSG00000031708 E035 10.3479996 0.0018860074 0.0001701187 0.01184553 8 84301158 84301471 314 - 0.754 1.181 1.598
ENSMUSG00000031708 E036 0.3316336 0.0260472616 0.3068168936   8 84316812 84316930 119 - 0.001 0.192 8.620
ENSMUSG00000031708 E037 276.9795115 0.0015828040 0.0126048272 0.24575211 8 84320969 84321116 148 - 2.478 2.407 -0.237
ENSMUSG00000031708 E038 1.4780666 0.2552503712 0.6671766204 0.95924101 8 84334520 84334600 81 - 0.337 0.425 0.502

Help

Please Click HERE to learn more details about the results from DEXseq.