ENSMUSG00000031748

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000034198 ENSMUSG00000031748 Control shVgll3 Gnao1 protein_coding protein_coding 16.20182 14.26931 18.13432 0.6007118 1.539825 0.3455921 2.7962521 2.416643 3.175861 0.14998221 0.12467038 0.3927211 0.17305000 0.1691333 0.17696667 0.007833333 1.00000000 0.01561339 FALSE TRUE
ENSMUST00000125695 ENSMUSG00000031748 Control shVgll3 Gnao1 protein_coding retained_intron 16.20182 14.26931 18.13432 0.6007118 1.539825 0.3455921 0.9676717 0.000000 1.935343 0.00000000 0.96783210 7.6038810 0.04943333 0.0000000 0.09886667 0.098866667 0.61744045 0.01561339 TRUE FALSE
ENSMUST00000138659 ENSMUSG00000031748 Control shVgll3 Gnao1 protein_coding protein_coding 16.20182 14.26931 18.13432 0.6007118 1.539825 0.3455921 1.9960778 1.805047 2.187109 0.35265782 0.09650762 0.2755993 0.12461667 0.1268000 0.12243333 -0.004366667 1.00000000 0.01561339 FALSE TRUE
ENSMUST00000155245 ENSMUSG00000031748 Control shVgll3 Gnao1 protein_coding retained_intron 16.20182 14.26931 18.13432 0.6007118 1.539825 0.3455921 2.6914942 1.688535 3.694453 0.09657779 0.38772779 1.1249693 0.16166667 0.1191000 0.20423333 0.085133333 0.09734915 0.01561339 FALSE TRUE
ENSMUST00000212008 ENSMUSG00000031748 Control shVgll3 Gnao1 protein_coding retained_intron 16.20182 14.26931 18.13432 0.6007118 1.539825 0.3455921 1.5224234 1.586644 1.458203 0.08151587 0.12132463 -0.1209904 0.09660000 0.1120667 0.08113333 -0.030933333 0.76263412 0.01561339 FALSE FALSE
MSTRG.22723.2 ENSMUSG00000031748 Control shVgll3 Gnao1 protein_coding   16.20182 14.26931 18.13432 0.6007118 1.539825 0.3455921 5.1775983 5.602467 4.752730 0.44207343 0.17595862 -0.2368463 0.32800000 0.3914667 0.26453333 -0.126933333 0.01561339 0.01561339 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000031748 E001 0.000000       8 94536594 94536757 164 +      
ENSMUSG00000031748 E002 6.236718 0.0029540999 2.721768e-01 0.818292058 8 94537125 94537263 139 + 0.785 0.921 0.528
ENSMUSG00000031748 E003 54.033496 0.0075172570 4.862670e-01 0.925384695 8 94537264 94537465 202 + 1.720 1.760 0.132
ENSMUSG00000031748 E004 15.921473 0.0107225398 9.718584e-01 1.000000000 8 94537466 94537467 2 + 1.229 1.229 0.001
ENSMUSG00000031748 E005 123.526586 0.0196678255 6.218015e-01 0.955141978 8 94537468 94537940 473 + 2.119 2.072 -0.157
ENSMUSG00000031748 E006 15.959482 0.0011621477 6.842487e-01 0.962918995 8 94537941 94538081 141 + 1.211 1.245 0.120
ENSMUSG00000031748 E007 0.000000       8 94538279 94538321 43 +      
ENSMUSG00000031748 E008 0.000000       8 94538322 94538398 77 +      
ENSMUSG00000031748 E009 33.499372 0.0018318441 5.864283e-01 0.950802295 8 94622859 94623000 142 + 1.556 1.522 -0.117
ENSMUSG00000031748 E010 77.819898 0.0004686154 9.520847e-01 1.000000000 8 94670826 94670986 161 + 1.898 1.895 -0.009
ENSMUSG00000031748 E011 59.164308 0.0003466811 5.006683e-01 0.927835066 8 94676032 94676132 101 + 1.795 1.764 -0.104
ENSMUSG00000031748 E012 28.918448 0.0012071758 8.460994e-01 0.986869180 8 94676133 94676160 28 + 1.470 1.482 0.043
ENSMUSG00000031748 E013 55.955850 0.0004207621 9.706729e-03 0.213840518 8 94676930 94677032 103 + 1.814 1.692 -0.412
ENSMUSG00000031748 E014 36.741221 0.0051686434 1.383800e-01 0.701003322 8 94677033 94677059 27 + 1.624 1.526 -0.335
ENSMUSG00000031748 E015 1.634188 0.0143655456 4.742901e-01 0.922071652 8 94677060 94677303 244 + 0.482 0.357 -0.673
ENSMUSG00000031748 E016 2.298543 0.0180182385 5.302629e-01 0.935744993 8 94679575 94679652 78 + 0.570 0.465 -0.504
ENSMUSG00000031748 E017 42.750348 0.0004855704 5.313050e-01 0.936193537 8 94680603 94680756 154 + 1.624 1.657 0.112
ENSMUSG00000031748 E018 1318.307072 0.0001232953 6.580267e-05 0.005441174 8 94682693 94689471 6779 + 3.105 3.135 0.099
ENSMUSG00000031748 E019 119.940577 0.0001912996 5.295191e-01 0.935744993 8 94689472 94690011 540 + 2.093 2.072 -0.069
ENSMUSG00000031748 E020 65.465282 0.0011986691 1.892339e-01 0.765891268 8 94690012 94690165 154 + 1.853 1.792 -0.204
ENSMUSG00000031748 E021 45.717652 0.0004330371 2.427183e-01 0.804421628 8 94692424 94693495 1072 + 1.638 1.697 0.203
ENSMUSG00000031748 E022 72.194618 0.0004329891 1.821910e-03 0.074344909 8 94693496 94693617 122 + 1.927 1.797 -0.438
ENSMUSG00000031748 E023 53.289511 0.0003661184 5.909092e-01 0.951399702 8 94693618 94693711 94 + 1.748 1.722 -0.088
ENSMUSG00000031748 E024 173.847794 0.0001589285 8.753961e-01 0.990735323 8 94693712 94694659 948 + 2.241 2.244 0.013
ENSMUSG00000031748 E025 324.353320 0.0004758476 9.250705e-02 0.627204482 8 94694660 94696139 1480 + 2.530 2.495 -0.117

Help

Please Click HERE to learn more details about the results from DEXseq.