ENSMUSG00000031865

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000077407 ENSMUSG00000031865 Control shVgll3 Dctn1 protein_coding protein_coding 41.88449 34.54317 49.22582 0.1116153 2.442293 0.5108903 25.436647 23.340300 27.532994 0.46528509 0.8059332 0.2382443 0.61861667 0.67563333 0.56160000 -0.11403333 0.167048163 0.004166721 FALSE  
ENSMUST00000127824 ENSMUSG00000031865 Control shVgll3 Dctn1 protein_coding retained_intron 41.88449 34.54317 49.22582 0.1116153 2.442293 0.5108903 2.221158 2.327248 2.115068 0.42448254 1.3704948 -0.1373023 0.05401667 0.06746667 0.04056667 -0.02690000 0.970665669 0.004166721 FALSE  
ENSMUST00000130917 ENSMUSG00000031865 Control shVgll3 Dctn1 protein_coding retained_intron 41.88449 34.54317 49.22582 0.1116153 2.442293 0.5108903 3.739462 2.772510 4.706414 0.11392396 0.3216150 0.7613034 0.08826667 0.08026667 0.09626667 0.01600000 0.970665669 0.004166721    
ENSMUST00000153793 ENSMUSG00000031865 Control shVgll3 Dctn1 protein_coding retained_intron 41.88449 34.54317 49.22582 0.1116153 2.442293 0.5108903 4.104386 2.343455 5.865317 0.05668637 0.5671894 1.3198866 0.09323333 0.06783333 0.11863333 0.05080000 0.004166721 0.004166721 FALSE  
ENSMUST00000154420 ENSMUSG00000031865 Control shVgll3 Dctn1 protein_coding retained_intron 41.88449 34.54317 49.22582 0.1116153 2.442293 0.5108903 2.163767 1.545371 2.782163 0.16524199 0.3055888 0.8441251 0.05050000 0.04476667 0.05623333 0.01146667 0.970665669 0.004166721 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000031865 E001 0.3230924 0.2837488737 2.015019e-01   6 83142902 83142932 31 + 0.000 0.240 11.872
ENSMUSG00000031865 E002 21.7391758 0.0008559726 7.743051e-01 0.978086767 6 83142933 83142976 44 + 1.344 1.365 0.072
ENSMUSG00000031865 E003 1.8142112 0.0090447664 6.032233e-01 0.953021573 6 83142986 83143050 65 + 0.484 0.394 -0.472
ENSMUSG00000031865 E004 0.0000000       6 83156568 83156570 3 +      
ENSMUSG00000031865 E005 0.0000000       6 83156571 83156594 24 +      
ENSMUSG00000031865 E006 0.1615462 0.0342442935 3.917266e-01   6 83156595 83156793 199 + 0.000 0.137 11.031
ENSMUSG00000031865 E007 0.0000000       6 83156794 83156887 94 +      
ENSMUSG00000031865 E008 177.2872655 0.0002243584 9.729639e-01 1.000000000 6 83159506 83159751 246 + 2.248 2.249 0.002
ENSMUSG00000031865 E009 98.1632514 0.0017519154 3.086048e-01 0.847534652 6 83160041 83160119 79 + 1.975 2.016 0.137
ENSMUSG00000031865 E010 70.9115700 0.0002788809 8.117130e-01 0.983768935 6 83160281 83160315 35 + 1.858 1.848 -0.035
ENSMUSG00000031865 E011 2.6355633 0.0068365197 5.937906e-01 0.951657704 6 83160918 83160938 21 + 0.594 0.508 -0.402
ENSMUSG00000031865 E012 11.6626844 0.0016601294 9.304067e-01 0.999303308 6 83162928 83163409 482 + 1.104 1.095 -0.032
ENSMUSG00000031865 E013 0.3272765 0.0273044438 1.442317e-01   6 83163410 83163427 18 + 0.000 0.240 12.031
ENSMUSG00000031865 E014 1.8178658 0.1001809485 9.733763e-01 1.000000000 6 83164746 83164766 21 + 0.441 0.455 0.074
ENSMUSG00000031865 E015 15.4480349 0.0013710531 2.944240e-02 0.386551279 6 83165593 83166058 466 + 1.289 1.095 -0.688
ENSMUSG00000031865 E016 214.6684530 0.0001464555 5.672315e-01 0.943543097 6 83166059 83166250 192 + 2.337 2.323 -0.048
ENSMUSG00000031865 E017 140.7947950 0.0001926965 6.749705e-01 0.961642565 6 83166530 83166727 198 + 2.143 2.155 0.041
ENSMUSG00000031865 E018 143.3291844 0.0001654648 2.197689e-01 0.793964317 6 83166883 83167087 205 + 2.140 2.176 0.119
ENSMUSG00000031865 E019 64.7019728 0.0003021918 8.658751e-01 0.988921231 6 83167185 83167263 79 + 1.818 1.810 -0.026
ENSMUSG00000031865 E020 128.7383628 0.0034169617 6.578686e-01 0.957539678 6 83167403 83167562 160 + 2.119 2.099 -0.068
ENSMUSG00000031865 E021 121.7644796 0.0003187522 1.279915e-01 0.681798719 6 83167675 83167779 105 + 2.064 2.113 0.163
ENSMUSG00000031865 E022 161.9364296 0.0001704721 9.536875e-02 0.630295808 6 83167951 83168142 192 + 2.188 2.234 0.153
ENSMUSG00000031865 E023 108.8010796 0.0002123829 9.306456e-01 0.999303308 6 83168227 83168343 117 + 2.039 2.036 -0.011
ENSMUSG00000031865 E024 145.3697776 0.0001761109 3.713427e-01 0.876839596 6 83168548 83168700 153 + 2.174 2.147 -0.089
ENSMUSG00000031865 E025 138.7694863 0.0019294925 7.995594e-01 0.981651838 6 83169442 83169602 161 + 2.138 2.147 0.029
ENSMUSG00000031865 E026 163.4361725 0.0001843021 9.090992e-01 0.996321195 6 83169716 83169884 169 + 2.215 2.211 -0.012
ENSMUSG00000031865 E027 87.5914761 0.0003342455 2.598319e-01 0.813530431 6 83170689 83170757 69 + 1.963 1.919 -0.147
ENSMUSG00000031865 E028 68.4684657 0.0093482951 6.932694e-01 0.963853687 6 83170941 83171003 63 + 1.850 1.824 -0.086
ENSMUSG00000031865 E029 127.3064666 0.0002346578 3.555582e-01 0.875176952 6 83171102 83171251 150 + 2.093 2.121 0.096
ENSMUSG00000031865 E030 7.3690946 0.0974736552 7.055300e-01 0.965928569 6 83171326 83171411 86 + 0.903 0.943 0.150
ENSMUSG00000031865 E031 88.7501424 0.0045066829 8.625284e-01 0.988842437 6 83171412 83171524 113 + 1.947 1.955 0.025
ENSMUSG00000031865 E032 64.0178946 0.0003909416 9.251589e-01 0.999303308 6 83171525 83171573 49 + 1.812 1.808 -0.015
ENSMUSG00000031865 E033 106.9283539 0.0002208702 1.324372e-02 0.252320823 6 83171656 83171787 132 + 1.991 2.075 0.282
ENSMUSG00000031865 E034 111.9891182 0.0002116886 1.453839e-01 0.710054028 6 83171970 83172083 114 + 2.028 2.077 0.161
ENSMUSG00000031865 E035 38.8465353 0.0005857776 6.719865e-01 0.961114969 6 83172084 83172095 12 + 1.608 1.584 -0.083
ENSMUSG00000031865 E036 57.0795869 0.0003868576 8.899785e-03 0.204211493 6 83172096 83172529 434 + 1.812 1.687 -0.422
ENSMUSG00000031865 E037 154.9150907 0.0014490254 9.085371e-01 0.996070043 6 83172530 83172672 143 + 2.191 2.188 -0.013
ENSMUSG00000031865 E038 146.5158942 0.0008877167 1.147568e-01 0.659020490 6 83172923 83173033 111 + 2.143 2.193 0.166
ENSMUSG00000031865 E039 96.7440024 0.0012511078 3.235354e-01 0.858601861 6 83173034 83173089 56 + 1.970 2.008 0.128
ENSMUSG00000031865 E040 37.6315106 0.0021655552 2.249208e-04 0.014949568 6 83173996 83174300 305 + 1.672 1.441 -0.789
ENSMUSG00000031865 E041 3.7855529 0.0052664977 1.496403e-03 0.066558643 6 83174301 83174315 15 + 0.836 0.324 -2.402
ENSMUSG00000031865 E042 13.8237905 0.0013534194 4.817631e-05 0.004302034 6 83174316 83174472 157 + 1.302 0.904 -1.439
ENSMUSG00000031865 E043 83.9845545 0.0068348939 8.339397e-01 0.985483953 6 83174473 83174515 43 + 1.932 1.919 -0.042
ENSMUSG00000031865 E044 113.3216472 0.0010704699 6.646932e-02 0.555795647 6 83174516 83174606 91 + 2.083 2.016 -0.225
ENSMUSG00000031865 E045 190.8406731 0.0009270885 9.845611e-02 0.633171864 6 83174738 83174930 193 + 2.301 2.252 -0.162
ENSMUSG00000031865 E046 83.6671263 0.0003394555 5.688477e-01 0.943543097 6 83175564 83175643 80 + 1.915 1.936 0.073
ENSMUSG00000031865 E047 132.3093030 0.0001796948 4.651840e-01 0.918643970 6 83176170 83176259 90 + 2.132 2.109 -0.077
ENSMUSG00000031865 E048 161.4866413 0.0002097072 2.032914e-01 0.777666200 6 83176656 83177099 444 + 2.192 2.227 0.117

Help

Please Click HERE to learn more details about the results from DEXseq.