ENSMUSG00000034160

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000044475 ENSMUSG00000034160 Control shVgll3 Ogt protein_coding protein_coding 43.16559 46.51297 39.81822 0.7338622 1.593617 -0.2241525 13.880338 13.094663 14.666013 0.05655596 0.3898837 0.16337983 0.3254833 0.2816333 0.3693333 0.08770000 0.02568178 0.02568178 FALSE  
ENSMUST00000147635 ENSMUSG00000034160 Control shVgll3 Ogt protein_coding protein_coding_CDS_not_defined 43.16559 46.51297 39.81822 0.7338622 1.593617 -0.2241525 7.869219 9.133999 6.604439 0.69197462 1.1392380 -0.46720643 0.1804833 0.1962667 0.1647000 -0.03156667 0.97066567 0.02568178 FALSE  
MSTRG.25092.5 ENSMUSG00000034160 Control shVgll3 Ogt protein_coding   43.16559 46.51297 39.81822 0.7338622 1.593617 -0.2241525 7.463790 7.706940 7.220639 0.66846811 2.2100949 -0.09390564 0.1748833 0.1653667 0.1844000 0.01903333 1.00000000 0.02568178 FALSE  
MSTRG.25092.7 ENSMUSG00000034160 Control shVgll3 Ogt protein_coding   43.16559 46.51297 39.81822 0.7338622 1.593617 -0.2241525 12.811391 15.556510 10.066272 0.47716348 2.1378214 -0.62748357 0.2926333 0.3349333 0.2503333 -0.08460000 0.83473870 0.02568178 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000034160 E001 0.000000       X 100683666 100683667 2 +      
ENSMUSG00000034160 E002 0.000000       X 100683668 100683669 2 +      
ENSMUSG00000034160 E003 4.449794 0.0087383644 8.207010e-01 0.9841108910 X 100683670 100683699 30 + 0.751 0.721 -0.122
ENSMUSG00000034160 E004 5.764296 0.0216193565 3.682504e-01 0.8754022310 X 100683700 100683713 14 + 0.890 0.768 -0.478
ENSMUSG00000034160 E005 5.764296 0.0216193565 3.682504e-01 0.8754022310 X 100683714 100683716 3 + 0.890 0.768 -0.478
ENSMUSG00000034160 E006 13.486647 0.0178055244 2.492346e-01 0.8053094477 X 100683717 100683745 29 + 1.222 1.099 -0.438
ENSMUSG00000034160 E007 63.677889 0.0003108259 7.364602e-01 0.9729001432 X 100683746 100683823 78 + 1.816 1.804 -0.042
ENSMUSG00000034160 E008 91.192866 0.0033027461 2.023302e-01 0.7768696025 X 100683824 100683928 105 + 1.992 1.937 -0.188
ENSMUSG00000034160 E009 38.606523 0.0312119965 2.905643e-01 0.8366558482 X 100686582 100686611 30 + 1.648 1.548 -0.339
ENSMUSG00000034160 E010 143.866974 0.0003100875 2.986222e-03 0.1013983877 X 100686612 100686762 151 + 2.205 2.118 -0.292
ENSMUSG00000034160 E011 173.728441 0.0001564536 2.789661e-02 0.3759614285 X 100687553 100687796 244 + 2.271 2.214 -0.191
ENSMUSG00000034160 E012 64.524727 0.0003520758 8.375279e-01 0.9867715120 X 100695746 100695814 69 + 1.818 1.812 -0.022
ENSMUSG00000034160 E013 1057.471471 0.0002192847 2.210953e-06 0.0002873747 X 100695815 100697581 1767 + 2.990 3.050 0.200
ENSMUSG00000034160 E014 675.074248 0.0001068653 1.056879e-03 0.0498523151 X 100697582 100698950 1369 + 2.802 2.850 0.160
ENSMUSG00000034160 E015 320.538243 0.0001222495 2.251552e-01 0.7984698495 X 100698951 100699229 279 + 2.491 2.518 0.089
ENSMUSG00000034160 E016 154.662264 0.0002695969 5.484071e-01 0.9370702847 X 100699230 100699346 117 + 2.180 2.200 0.067
ENSMUSG00000034160 E017 152.489505 0.0005361038 5.966992e-01 0.9520020264 X 100704858 100704937 80 + 2.175 2.193 0.061
ENSMUSG00000034160 E018 343.989875 0.0008835358 5.725873e-01 0.9446095489 X 100706965 100707160 196 + 2.542 2.532 -0.036
ENSMUSG00000034160 E019 204.080777 0.0001361182 4.064428e-01 0.8939091511 X 100707449 100707589 141 + 2.320 2.302 -0.061
ENSMUSG00000034160 E020 135.836610 0.0001776327 1.017018e-01 0.6396278620 X 100708250 100708350 101 + 2.160 2.113 -0.159
ENSMUSG00000034160 E021 237.124372 0.0013771475 3.597816e-01 0.8751769517 X 100710884 100711037 154 + 2.388 2.364 -0.079
ENSMUSG00000034160 E022 171.024107 0.0001742234 1.674854e-01 0.7453157959 X 100711122 100711223 102 + 2.253 2.218 -0.118
ENSMUSG00000034160 E023 234.810002 0.0001194011 1.738784e-01 0.7558253678 X 100711586 100711765 180 + 2.387 2.357 -0.097
ENSMUSG00000034160 E024 241.961023 0.0001280328 1.779228e-01 0.7567761689 X 100713363 100713521 159 + 2.399 2.371 -0.095
ENSMUSG00000034160 E025 161.576118 0.0029839205 1.633235e-01 0.7359623059 X 100713637 100713726 90 + 2.237 2.185 -0.173
ENSMUSG00000034160 E026 155.937844 0.0001604781 5.285850e-01 0.9357449935 X 100716054 100716179 126 + 2.203 2.187 -0.052
ENSMUSG00000034160 E027 269.023993 0.0001180730 4.507578e-01 0.9134998682 X 100716649 100716819 171 + 2.438 2.423 -0.047
ENSMUSG00000034160 E028 328.836997 0.0002257185 7.902466e-01 0.9802040289 X 100716929 100717045 117 + 2.513 2.520 0.026
ENSMUSG00000034160 E029 422.687882 0.0004989836 7.653709e-02 0.5871022247 X 100717148 100717318 171 + 2.643 2.610 -0.110
ENSMUSG00000034160 E030 244.275085 0.0001259310 7.876965e-02 0.5915325445 X 100719755 100719907 153 + 2.408 2.371 -0.126
ENSMUSG00000034160 E031 324.538805 0.0001075175 4.035389e-01 0.8925493948 X 100722315 100722567 253 + 2.519 2.505 -0.047
ENSMUSG00000034160 E032 284.286941 0.0009595530 8.433927e-01 0.9868691796 X 100722830 100722953 124 + 2.456 2.453 -0.010
ENSMUSG00000034160 E033 2382.273214 0.0011154159 4.776128e-01 0.9229980193 X 100725762 100727957 2196 + 3.369 3.381 0.040

Help

Please Click HERE to learn more details about the results from DEXseq.