ENSMUSG00000037736

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000038188 ENSMUSG00000037736 Control shVgll3 Limch1 protein_coding protein_coding 0.4490624 0.2840421 0.6140827 0.03116086 0.2203562 1.085714 0.12022662 0.24045323 0.00000000 0.006765053 0.00000000 -4.64646933 0.43475000 0.8695000 0.0000000 -0.8695000 0.01636287 0.01636287 FALSE TRUE
ENSMUST00000117601 ENSMUSG00000037736 Control shVgll3 Limch1 protein_coding protein_coding 0.4490624 0.2840421 0.6140827 0.03116086 0.2203562 1.085714 0.03862841 0.00000000 0.07725682 0.000000000 0.04598895 3.12526782 0.05076667 0.0000000 0.1015333 0.1015333 0.91008991 0.01636287 FALSE TRUE
ENSMUST00000119854 ENSMUSG00000037736 Control shVgll3 Limch1 protein_coding protein_coding 0.4490624 0.2840421 0.6140827 0.03116086 0.2203562 1.085714 0.10369129 0.00000000 0.20738257 0.000000000 0.03522624 4.44216439 0.22640000 0.0000000 0.4528000 0.4528000 0.44011755 0.01636287 FALSE TRUE
ENSMUST00000132991 ENSMUSG00000037736 Control shVgll3 Limch1 protein_coding protein_coding 0.4490624 0.2840421 0.6140827 0.03116086 0.2203562 1.085714 0.02302253 0.00000000 0.04604507 0.000000000 0.04604507 2.48658738 0.04830000 0.0000000 0.0966000 0.0966000 0.99043920 0.01636287 FALSE FALSE
ENSMUST00000137394 ENSMUSG00000037736 Control shVgll3 Limch1 protein_coding retained_intron 0.4490624 0.2840421 0.6140827 0.03116086 0.2203562 1.085714 0.09533588 0.00000000 0.19067175 0.000000000 0.19067175 4.32676563 0.09120000 0.0000000 0.1824000 0.1824000 0.97066567 0.01636287 FALSE FALSE
ENSMUST00000140428 ENSMUSG00000037736 Control shVgll3 Limch1 protein_coding retained_intron 0.4490624 0.2840421 0.6140827 0.03116086 0.2203562 1.085714 0.03758643 0.03919079 0.03598207 0.039190788 0.03598207 -0.09731678 0.11276667 0.1131667 0.1123667 -0.0008000 0.98233508 0.01636287 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000037736 E001 0.0000000       5 66903170 66903187 18 +      
ENSMUSG00000037736 E002 0.0000000       5 66903188 66903209 22 +      
ENSMUSG00000037736 E003 0.0000000       5 66903210 66903225 16 +      
ENSMUSG00000037736 E004 0.0000000       5 66903226 66903231 6 +      
ENSMUSG00000037736 E005 0.0000000       5 66903232 66903348 117 +      
ENSMUSG00000037736 E006 0.0000000       5 66903349 66905747 2399 +      
ENSMUSG00000037736 E007 0.0000000       5 67015226 67015296 71 +      
ENSMUSG00000037736 E008 0.0000000       5 67039242 67039311 70 +      
ENSMUSG00000037736 E009 0.0000000       5 67055774 67055802 29 +      
ENSMUSG00000037736 E010 0.0000000       5 67055803 67055966 164 +      
ENSMUSG00000037736 E011 0.0000000       5 67094719 67094810 92 +      
ENSMUSG00000037736 E012 0.0000000       5 67111012 67111118 107 +      
ENSMUSG00000037736 E013 0.0000000       5 67116931 67116961 31 +      
ENSMUSG00000037736 E014 0.0000000       5 67118500 67118610 111 +      
ENSMUSG00000037736 E015 0.0000000       5 67125348 67125618 271 +      
ENSMUSG00000037736 E016 0.0000000       5 67125759 67125907 149 +      
ENSMUSG00000037736 E017 0.0000000       5 67125908 67125919 12 +      
ENSMUSG00000037736 E018 0.1657302 0.035040021 0.447841598   5 67125920 67125992 73 + 0.000 0.129 9.670
ENSMUSG00000037736 E019 0.6589100 0.019360950 0.029215311   5 67125993 67126076 84 + 0.000 0.377 13.436
ENSMUSG00000037736 E020 0.0000000       5 67126077 67126083 7 +      
ENSMUSG00000037736 E021 0.1613534 0.034838085 0.525576359   5 67126304 67126418 115 + 0.119 0.000 -12.296
ENSMUSG00000037736 E022 1.4805292 0.011933358 0.637789177 0.95668705 5 67126419 67126614 196 + 0.353 0.435 0.459
ENSMUSG00000037736 E023 0.8305561 0.017963714 0.732370361 0.97214098 5 67131753 67131885 133 + 0.288 0.228 -0.448
ENSMUSG00000037736 E024 1.1536485 0.013764574 0.618466417 0.95514198 5 67131886 67132005 120 + 0.288 0.377 0.551
ENSMUSG00000037736 E025 0.0000000       5 67132006 67132258 253 +      
ENSMUSG00000037736 E026 0.0000000       5 67132902 67133162 261 +      
ENSMUSG00000037736 E027 0.0000000       5 67134361 67134437 77 +      
ENSMUSG00000037736 E028 0.0000000       5 67141180 67141482 303 +      
ENSMUSG00000037736 E029 0.0000000       5 67142776 67143018 243 +      
ENSMUSG00000037736 E030 0.3318168 0.028429326 0.945373836   5 67143554 67143880 327 + 0.119 0.129 0.137
ENSMUSG00000037736 E031 0.0000000       5 67145037 67145152 116 +      
ENSMUSG00000037736 E032 0.1615462 0.034991187 0.448425557   5 67145274 67145385 112 + 0.000 0.129 11.851
ENSMUSG00000037736 E033 0.6547260 0.019073446 0.029272722   5 67150486 67150521 36 + 0.000 0.377 13.436
ENSMUSG00000037736 E034 0.0000000       5 67154435 67154462 28 +      
ENSMUSG00000037736 E035 1.4761918 0.011069532 0.253251804 0.80699081 5 67154463 67154589 127 + 0.288 0.487 1.137
ENSMUSG00000037736 E036 2.6401234 0.012714738 0.414339838 0.89830640 5 67155990 67156147 158 + 0.617 0.487 -0.601
ENSMUSG00000037736 E037 0.0000000       5 67156148 67156322 175 +      
ENSMUSG00000037736 E038 4.2750322 0.005641204 0.334690397 0.86618188 5 67156323 67156731 409 + 0.780 0.648 -0.541
ENSMUSG00000037736 E039 1.7992549 0.010117093 0.879928783 0.99189545 5 67159771 67159992 222 + 0.460 0.435 -0.126
ENSMUSG00000037736 E040 1.4676507 0.019091603 0.262564413 0.81433690 5 67173808 67173898 91 + 0.288 0.487 1.136
ENSMUSG00000037736 E041 3.7666837 0.105665580 0.872521156 0.99017777 5 67174960 67175120 161 + 0.649 0.710 0.257
ENSMUSG00000037736 E042 1.3173371 0.059994547 0.041651919 0.45830649 5 67179235 67179340 106 + 0.505 0.129 -2.672
ENSMUSG00000037736 E043 0.4992290 0.298587224 0.675739593   5 67182648 67182716 69 + 0.212 0.129 -0.865
ENSMUSG00000037736 E044 0.4931702 0.023074702 0.621439247   5 67183415 67183455 41 + 0.212 0.129 -0.863
ENSMUSG00000037736 E045 0.8248038 0.018187109 0.582281493 0.94850009 5 67184831 67184911 81 + 0.212 0.309 0.722
ENSMUSG00000037736 E046 0.8246206 0.019598286 0.139863308 0.70264198 5 67186101 67186193 93 + 0.119 0.377 2.137
ENSMUSG00000037736 E047 0.9973055 0.016744374 0.478508643 0.92326912 5 67187045 67187149 105 + 0.353 0.228 -0.863
ENSMUSG00000037736 E048 1.3208679 0.013400332 0.558909142 0.94110467 5 67188169 67188293 125 + 0.410 0.309 -0.600
ENSMUSG00000037736 E049 1.3110855 0.012713953 0.002381728 0.08802766 5 67190421 67190542 122 + 0.545 0.000 -14.386
ENSMUSG00000037736 E050 1.3095862 0.022110064 0.570850597 0.94387267 5 67191509 67191632 124 + 0.410 0.309 -0.600
ENSMUSG00000037736 E051 0.0000000       5 67193369 67193446 78 +      
ENSMUSG00000037736 E052 0.0000000       5 67201192 67201303 112 +      
ENSMUSG00000037736 E053 0.3228996 0.028642021 0.947799712   5 67201689 67201743 55 + 0.119 0.129 0.137
ENSMUSG00000037736 E054 0.8207929 0.018176906 0.582601443 0.94855494 5 67201744 67201797 54 + 0.212 0.309 0.722
ENSMUSG00000037736 E055 0.6592467 0.022570069 0.924855419   5 67204042 67204144 103 + 0.212 0.228 0.137
ENSMUSG00000037736 E056 0.4979034 0.026293296 0.624202462   5 67211579 67211768 190 + 0.212 0.129 -0.863
ENSMUSG00000037736 E057 0.1613534 0.034838085 0.525576359   5 67211769 67211896 128 + 0.119 0.000 -12.296
ENSMUSG00000037736 E058 17.9461199 0.001333558 0.638138166 0.95668705 5 67211897 67214501 2605 + 1.262 1.293 0.110

Help

Please Click HERE to learn more details about the results from DEXseq.