ENSMUSG00000039137

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000095037 ENSMUSG00000039137 Control shVgll3 Whrn protein_coding protein_coding 24.41773 30.86386 17.97161 0.6892856 0.3359599 -0.779864 6.736133 8.256779 5.2154883 1.20823849 0.5886663 -0.6617594 0.2779333 0.2662000 0.28966667 0.02346667 0.974580758 0.001222806 FALSE  
ENSMUST00000102867 ENSMUSG00000039137 Control shVgll3 Whrn protein_coding protein_coding 24.41773 30.86386 17.97161 0.6892856 0.3359599 -0.779864 2.567377 4.192036 0.9427181 0.25848906 0.1797974 -2.1409674 0.0941000 0.1359667 0.05223333 -0.08373333 0.001222806 0.001222806 FALSE  
MSTRG.16039.2 ENSMUSG00000039137 Control shVgll3 Whrn protein_coding   24.41773 30.86386 17.97161 0.6892856 0.3359599 -0.779864 2.195834 2.676820 1.7148481 0.07832695 0.0499285 -0.6394302 0.0911500 0.0869000 0.09540000 0.00850000 0.970665669 0.001222806 TRUE  
MSTRG.16039.21 ENSMUSG00000039137 Control shVgll3 Whrn protein_coding   24.41773 30.86386 17.97161 0.6892856 0.3359599 -0.779864 2.575334 2.922575 2.2280934 0.30316882 0.3536710 -0.3898979 0.1098000 0.0950000 0.12460000 0.02960000 0.970665669 0.001222806 FALSE  
MSTRG.16039.3 ENSMUSG00000039137 Control shVgll3 Whrn protein_coding   24.41773 30.86386 17.97161 0.6892856 0.3359599 -0.779864 3.632384 4.730930 2.5338374 0.30805326 0.4457445 -0.8981636 0.1473333 0.1530000 0.14166667 -0.01133333 0.976248484 0.001222806 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000039137 E001 0.1659033 0.0342752238 7.394676e-01   4 63333139 63333146 8 - 0.000 0.101 8.535
ENSMUSG00000039137 E002 0.1659033 0.0342752238 7.394676e-01   4 63333147 63333148 2 - 0.000 0.101 10.594
ENSMUSG00000039137 E003 0.4933529 0.0244810708 1.822823e-01   4 63333149 63333150 2 - 0.000 0.251 12.286
ENSMUSG00000039137 E004 0.6547063 0.0210297460 5.731045e-01   4 63333151 63333153 3 - 0.151 0.251 0.918
ENSMUSG00000039137 E005 2.4712359 0.0985562558 2.172175e-01 0.789869485 4 63333154 63333169 16 - 0.351 0.617 1.336
ENSMUSG00000039137 E006 8.6966318 0.0255505846 1.109354e-01 0.653764334 4 63333170 63333217 48 - 0.832 1.049 0.813
ENSMUSG00000039137 E007 411.7972835 0.0008106842 7.175561e-02 0.577302039 4 63333218 63333903 686 - 2.580 2.619 0.131
ENSMUSG00000039137 E008 76.3862704 0.0002945127 8.504381e-02 0.609391938 4 63334239 63334361 123 - 1.831 1.904 0.245
ENSMUSG00000039137 E009 100.2177164 0.0002166644 6.136958e-01 0.954218760 4 63334649 63334827 179 - 1.982 2.001 0.064
ENSMUSG00000039137 E010 11.3838840 0.0159249372 7.595606e-01 0.977377665 4 63334828 63334830 3 - 1.101 1.069 -0.116
ENSMUSG00000039137 E011 121.1365112 0.0008829965 1.267156e-01 0.678149088 4 63334831 63336250 1420 - 2.107 2.054 -0.176
ENSMUSG00000039137 E012 5.4262755 0.0064327160 7.960146e-01 0.981007991 4 63336251 63336324 74 - 0.776 0.812 0.141
ENSMUSG00000039137 E013 485.0295811 0.0001085533 2.815100e-02 0.377649546 4 63336325 63336859 535 - 2.653 2.689 0.120
ENSMUSG00000039137 E014 50.8538931 0.0061843550 8.994203e-01 0.995632253 4 63336860 63337658 799 - 1.699 1.706 0.027
ENSMUSG00000039137 E015 62.9481103 0.0003242569 5.250324e-01 0.934714599 4 63337659 63337705 47 - 1.812 1.784 -0.094
ENSMUSG00000039137 E016 33.4286897 0.0285757702 9.484906e-01 1.000000000 4 63337706 63337730 25 - 1.534 1.520 -0.048
ENSMUSG00000039137 E017 27.1175866 0.0006943912 6.690829e-01 0.959827964 4 63337731 63337871 141 - 1.420 1.450 0.103
ENSMUSG00000039137 E018 304.5944231 0.0003871273 4.265106e-05 0.003959779 4 63337872 63339871 2000 - 2.525 2.438 -0.291
ENSMUSG00000039137 E019 495.0647978 0.0001190424 1.290704e-04 0.009531121 4 63339872 63343948 4077 - 2.720 2.660 -0.198
ENSMUSG00000039137 E020 26.4641217 0.0165486750 5.774103e-02 0.523476018 4 63343949 63344272 324 - 1.523 1.355 -0.579
ENSMUSG00000039137 E021 286.1557596 0.0010052068 1.912989e-01 0.766831960 4 63344273 63347322 3050 - 2.467 2.434 -0.108
ENSMUSG00000039137 E022 7.9195016 0.0053684083 8.797201e-01 0.991895454 4 63347323 63347355 33 - 0.928 0.946 0.070
ENSMUSG00000039137 E023 6.8892094 0.0031140439 2.448768e-01 0.804421628 4 63347356 63347469 114 - 0.968 0.829 -0.529
ENSMUSG00000039137 E024 2.6115910 0.0769123136 4.373025e-02 0.466161959 4 63347470 63347471 2 - 0.744 0.363 -1.803
ENSMUSG00000039137 E025 26.6656630 0.0063152696 3.188856e-02 0.403056768 4 63347472 63347654 183 - 1.523 1.361 -0.560
ENSMUSG00000039137 E026 91.5429178 0.0155173383 8.053528e-01 0.982108047 4 63347655 63349669 2015 - 1.948 1.960 0.037
ENSMUSG00000039137 E027 18.1507707 0.0568815703 8.904714e-01 0.994917852 4 63349670 63350086 417 - 1.275 1.268 -0.023
ENSMUSG00000039137 E028 65.9865872 0.0016527672 7.640185e-01 0.977990679 4 63350087 63350296 210 - 1.823 1.809 -0.045
ENSMUSG00000039137 E029 2.9652718 0.0058669493 3.420570e-01 0.871209754 4 63350297 63350432 136 - 0.488 0.643 0.712
ENSMUSG00000039137 E030 73.2212558 0.0002726324 1.511075e-01 0.718563006 4 63350902 63351110 209 - 1.820 1.882 0.208
ENSMUSG00000039137 E031 15.4626777 0.0012357315 7.849435e-02 0.591532544 4 63351111 63351114 4 - 1.101 1.261 0.570
ENSMUSG00000039137 E032 194.9052351 0.0001358535 6.983109e-01 0.964753941 4 63351115 63352346 1232 - 2.274 2.285 0.036
ENSMUSG00000039137 E033 28.2938848 0.0131566313 5.167075e-01 0.931492890 4 63352347 63352383 37 - 1.420 1.477 0.199
ENSMUSG00000039137 E034 80.5455348 0.0081963941 1.398576e-01 0.702641975 4 63352384 63353037 654 - 1.846 1.931 0.286
ENSMUSG00000039137 E035 71.6700179 0.0003325112 5.308194e-03 0.149098432 4 63353038 63353584 547 - 1.771 1.894 0.413
ENSMUSG00000039137 E036 4.9226716 0.1068250963 1.749155e-01 0.756716394 4 63353585 63353596 12 - 0.906 0.642 -1.057
ENSMUSG00000039137 E037 65.1546864 0.0003020363 3.625859e-01 0.875402231 4 63353597 63353799 203 - 1.783 1.825 0.140
ENSMUSG00000039137 E038 0.9831851 0.0146225160 5.762390e-01 0.946630731 4 63354466 63354838 373 - 0.351 0.251 -0.667
ENSMUSG00000039137 E039 8.2521516 0.0031201606 1.524431e-02 0.277769416 4 63378400 63378704 305 - 1.101 0.829 -1.015
ENSMUSG00000039137 E040 0.1659033 0.0342752238 7.394676e-01   4 63379057 63379518 462 - 0.000 0.101 10.594
ENSMUSG00000039137 E041 43.7022893 0.0007484242 3.772061e-02 0.439483449 4 63379519 63379644 126 - 1.564 1.681 0.399
ENSMUSG00000039137 E042 69.9948496 0.0029469866 8.278484e-01 0.985483953 4 63390887 63391105 219 - 1.847 1.836 -0.034
ENSMUSG00000039137 E043 0.1659033 0.0342752238 7.394676e-01   4 63411774 63411837 64 - 0.000 0.101 10.594
ENSMUSG00000039137 E044 176.0818401 0.0015022932 1.652911e-01 0.739134376 4 63412850 63413648 799 - 2.208 2.254 0.153
ENSMUSG00000039137 E045 245.1720611 0.0015143513 3.452479e-01 0.872857195 4 63413649 63414265 617 - 2.362 2.391 0.095

Help

Please Click HERE to learn more details about the results from DEXseq.