ENSMUSG00000039852

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000105682 ENSMUSG00000039852 Control shVgll3 Rere protein_coding protein_coding 7.772821 7.158426 8.387217 0.4034263 0.3596305 0.2282548 2.0363940 1.823437 2.2493506 0.1954965 0.1130299 0.30135725 0.26138333 0.2547000 0.26806667 0.01336667 9.947968e-01 1.117829e-05 FALSE  
ENSMUST00000219467 ENSMUSG00000039852 Control shVgll3 Rere protein_coding protein_coding 7.772821 7.158426 8.387217 0.4034263 0.3596305 0.2282548 0.3723048 0.000000 0.7446096 0.0000000 0.2025346 6.23765851 0.04383333 0.0000000 0.08766667 0.08766667 1.117829e-05 1.117829e-05 FALSE  
MSTRG.16919.5 ENSMUSG00000039852 Control shVgll3 Rere protein_coding   7.772821 7.158426 8.387217 0.4034263 0.3596305 0.2282548 2.6974820 2.734414 2.6605497 0.3362147 0.3943479 -0.03936150 0.34896667 0.3790667 0.31886667 -0.06020000 9.706657e-01 1.117829e-05 FALSE  
MSTRG.16919.8 ENSMUSG00000039852 Control shVgll3 Rere protein_coding   7.772821 7.158426 8.387217 0.4034263 0.3596305 0.2282548 2.0972913 2.086104 2.1084787 0.1280067 0.2581683 0.01531828 0.27170000 0.2935000 0.24990000 -0.04360000 9.706657e-01 1.117829e-05 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000039852 E001 8.8841935 0.0148446949 0.031939871 0.4030568 4 150366103 150366268 166 + 1.098 0.840 -0.962
ENSMUSG00000039852 E002 18.7162116 0.0034233610 0.108358108 0.6489575 4 150366269 150366532 264 + 1.352 1.221 -0.456
ENSMUSG00000039852 E003 0.1615462 0.0344093575 0.442058243   4 150366771 150366923 153 + 0.000 0.130 9.840
ENSMUSG00000039852 E004 12.5055504 0.0015172858 0.820040455 0.9841109 4 150490653 150490850 198 + 1.119 1.142 0.085
ENSMUSG00000039852 E005 18.4107885 0.0010124812 0.857501396 0.9887515 4 150490851 150491121 271 + 1.280 1.296 0.058
ENSMUSG00000039852 E006 5.5793267 0.0038900305 0.763696941 0.9779907 4 150515980 150516050 71 + 0.799 0.840 0.161
ENSMUSG00000039852 E007 5.9351320 0.0033153100 0.002149037 0.0826955 4 150523800 150523925 126 + 0.987 0.578 -1.647
ENSMUSG00000039852 E008 7.7431163 0.0305158506 0.202375670 0.7768696 4 150553152 150553257 106 + 1.015 0.840 -0.659
ENSMUSG00000039852 E009 6.2242506 0.0040000521 0.751666098 0.9754137 4 150554752 150554848 97 + 0.877 0.840 -0.144
ENSMUSG00000039852 E010 4.9093230 0.0769312821 0.424854302 0.9054504 4 150561821 150561925 105 + 0.839 0.684 -0.624
ENSMUSG00000039852 E011 0.3272567 0.0285452346 0.937999890   4 150572850 150573032 183 + 0.118 0.130 0.161
ENSMUSG00000039852 E012 4.7714124 0.0038891036 0.788941314 0.9802040 4 150584460 150584508 49 + 0.777 0.742 -0.139
ENSMUSG00000039852 E013 9.2213004 0.0607908145 0.902028712 0.9956323 4 150593287 150593411 125 + 1.015 1.002 -0.047
ENSMUSG00000039852 E014 6.9153082 0.0028646623 0.733298363 0.9723295 4 150594396 150594495 100 + 0.877 0.919 0.161
ENSMUSG00000039852 E015 7.0703308 0.0239012505 0.739382680 0.9729001 4 150619304 150619402 99 + 0.928 0.882 -0.175
ENSMUSG00000039852 E016 1.4945460 0.2742501401 0.646834631 0.9566871 4 150653901 150654044 144 + 0.458 0.311 -0.841
ENSMUSG00000039852 E017 3.2848340 0.0054447338 0.814780292 0.9839934 4 150654045 150654113 69 + 0.614 0.651 0.161
ENSMUSG00000039852 E018 2.6224224 0.0579797778 0.767907895 0.9779907 4 150654114 150654143 30 + 0.580 0.536 -0.204
ENSMUSG00000039852 E019 8.2105314 0.0023679640 0.515304918 0.9314929 4 150654673 150654753 81 + 0.928 1.002 0.276
ENSMUSG00000039852 E020 0.0000000       4 150654754 150654952 199 +      
ENSMUSG00000039852 E021 0.1667494 0.0362617268 0.535080584   4 150660607 150660745 139 + 0.118 0.000 -10.463
ENSMUSG00000039852 E022 25.4934654 0.0019376942 0.943636020 1.0000000 4 150695311 150695473 163 + 1.424 1.422 -0.007
ENSMUSG00000039852 E023 15.7819671 0.0012911205 0.914037776 0.9972978 4 150696444 150696536 93 + 1.219 1.231 0.040
ENSMUSG00000039852 E024 30.4396537 0.0045794575 0.634031519 0.9564604 4 150697004 150697203 200 + 1.511 1.480 -0.106
ENSMUSG00000039852 E025 9.8620403 0.0121258582 0.572140217 0.9446095 4 150697794 150698181 388 + 1.064 1.002 -0.226
ENSMUSG00000039852 E026 23.5612131 0.0206249403 0.500912745 0.9278351 4 150698182 150698343 162 + 1.358 1.422 0.222
ENSMUSG00000039852 E027 17.9416586 0.0010732627 0.405200000 0.8934781 4 150698597 150698710 114 + 1.243 1.311 0.240
ENSMUSG00000039852 E028 260.3097724 0.0035901590 0.484936040 0.9248096 4 150698934 150699871 938 + 2.426 2.406 -0.069
ENSMUSG00000039852 E029 103.2088286 0.0002351849 0.643700751 0.9566871 4 150699872 150700288 417 + 2.009 2.027 0.060
ENSMUSG00000039852 E030 37.8096958 0.0005101769 0.145379453 0.7100540 4 150700398 150700620 223 + 1.547 1.631 0.286
ENSMUSG00000039852 E031 2.4692246 0.0078009029 0.280160507 0.8253129 4 150701213 150701215 3 + 0.614 0.438 -0.839
ENSMUSG00000039852 E032 130.6616682 0.0002701274 0.169851506 0.7479066 4 150701216 150701722 507 + 2.137 2.098 -0.131
ENSMUSG00000039852 E033 62.1174465 0.0005527277 0.358259091 0.8751770 4 150701723 150701936 214 + 1.818 1.779 -0.130
ENSMUSG00000039852 E034 69.6871656 0.0003831048 0.233027979 0.8037828 4 150702863 150703009 147 + 1.824 1.876 0.174
ENSMUSG00000039852 E035 4.1059634 0.0044630743 0.741380611 0.9729001 4 150703458 150703481 24 + 0.729 0.684 -0.187
ENSMUSG00000039852 E036 59.4052163 0.0003436165 0.464366964 0.9184261 4 150703482 150703662 181 + 1.795 1.764 -0.104
ENSMUSG00000039852 E037 334.4937825 0.0018155080 0.030100180 0.3912355 4 150703913 150706423 2511 + 2.499 2.552 0.176

Help

Please Click HERE to learn more details about the results from DEXseq.