ENSMUSG00000069601

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000047061 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding protein_coding 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.08487345 0.00000000 0.1697469 0.00000000 0.1697469 4.1678951 0.03160000 0.00000000 0.06320000 0.063200000 0.970665669 0.009096573 FALSE  
ENSMUST00000054167 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding protein_coding 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.39133005 0.23535154 0.5473086 0.12431698 0.2858045 1.1836260 0.12916667 0.07763333 0.18070000 0.103066667 0.970665669 0.009096573 FALSE  
ENSMUST00000092432 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding protein_coding 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.16950078 0.09575432 0.2432472 0.09575432 0.2432472 1.2598301 0.05388333 0.03436667 0.07340000 0.039033333 1.000000000 0.009096573 FALSE  
ENSMUST00000182029 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding protein_coding 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.12330125 0.24660251 0.0000000 0.04604567 0.0000000 -4.6814634 0.04140000 0.08280000 0.00000000 -0.082800000 0.009096573 0.009096573 FALSE  
ENSMUST00000182155 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding protein_coding 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.19512329 0.14987761 0.2403690 0.14987761 0.1315922 0.6470879 0.05831667 0.04886667 0.06776667 0.018900000 0.970665669 0.009096573 FALSE  
ENSMUST00000182207 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding protein_coding 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.23819604 0.26851819 0.2078739 0.13661887 0.1265807 -0.3542782 0.08270000 0.09240000 0.07300000 -0.019400000 1.000000000 0.009096573 FALSE  
ENSMUST00000182884 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding protein_coding 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.26912179 0.27131205 0.2669315 0.13899209 0.1338265 -0.0226420 0.08968333 0.09420000 0.08516667 -0.009033333 1.000000000 0.009096573 FALSE  
ENSMUST00000183001 ENSMUSG00000069601 Control shVgll3 Ank3 protein_coding retained_intron 3.09397 2.954539 3.233401 0.08529314 0.2955814 0.1296994 0.92467329 1.12764039 0.7217062 0.06203407 0.3614664 -0.6367083 0.29423333 0.38246667 0.20600000 -0.176466667 0.970665669 0.009096573 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000069601 E001 0.0000000       10 69234603 69234825 223 +      
ENSMUSG00000069601 E002 0.0000000       10 69234826 69234959 134 +      
ENSMUSG00000069601 E003 0.0000000       10 69236219 69236366 148 +      
ENSMUSG00000069601 E004 0.1660866 0.0348030223 0.5947907115   10 69320059 69320097 39 + 0.112 0.000 -10.722
ENSMUSG00000069601 E005 0.1657302 0.0345837709 0.3946360947   10 69320098 69320553 456 + 0.000 0.136 13.043
ENSMUSG00000069601 E006 0.6543404 0.0314502366 0.8185473652   10 69369602 69369644 43 + 0.201 0.240 0.330
ENSMUSG00000069601 E007 0.4929870 0.0218253718 0.4424174074   10 69369645 69369672 28 + 0.112 0.240 1.330
ENSMUSG00000069601 E008 0.1613534 0.0340373044 0.5959013816   10 69369673 69369676 4 + 0.112 0.000 -13.458
ENSMUSG00000069601 E009 3.4220720 0.1256932920 0.3807914510 0.88103212 10 69369677 69369894 218 + 0.731 0.507 -0.987
ENSMUSG00000069601 E010 3.9350196 0.0049767255 0.0778723485 0.59037637 10 69369895 69370037 143 + 0.561 0.815 1.066
ENSMUSG00000069601 E011 0.9868397 0.0168642319 0.2781960138 0.82303307 10 69370038 69370051 14 + 0.201 0.394 1.330
ENSMUSG00000069601 E012 2.3019951 0.0072754271 0.6738405959 0.96164256 10 69370052 69370114 63 + 0.485 0.554 0.330
ENSMUSG00000069601 E013 0.1667494 0.0355717341 0.5944115627   10 69430880 69431489 610 + 0.112 0.000 -13.455
ENSMUSG00000069601 E014 0.0000000       10 69437283 69437968 686 +      
ENSMUSG00000069601 E015 0.0000000       10 69542126 69542199 74 +      
ENSMUSG00000069601 E016 0.0000000       10 69542200 69542303 104 +      
ENSMUSG00000069601 E017 0.0000000       10 69542304 69542307 4 +      
ENSMUSG00000069601 E018 0.0000000       10 69542308 69542755 448 +      
ENSMUSG00000069601 E019 0.1657302 0.0345837709 0.3946360947   10 69542756 69546306 3551 + 0.000 0.136 13.043
ENSMUSG00000069601 E020 0.0000000       10 69556629 69556690 62 +      
ENSMUSG00000069601 E021 0.0000000       10 69621344 69621354 11 +      
ENSMUSG00000069601 E022 0.0000000       10 69621355 69621502 148 +      
ENSMUSG00000069601 E023 0.0000000       10 69623286 69623434 149 +      
ENSMUSG00000069601 E024 2.7995722 0.0595199960 0.5161853877 0.93149289 10 69644246 69644347 102 + 0.626 0.507 -0.544
ENSMUSG00000069601 E025 4.1143123 0.0095077653 0.1040840652 0.64156759 10 69644703 69644801 99 + 0.798 0.554 -1.033
ENSMUSG00000069601 E026 2.7993594 0.0172385899 0.8004467711 0.98165184 10 69645001 69645099 99 + 0.595 0.554 -0.185
ENSMUSG00000069601 E027 0.0000000       10 69645100 69646295 1196 +      
ENSMUSG00000069601 E028 2.1310424 0.0085070927 0.1165617985 0.66203098 10 69651525 69651623 99 + 0.595 0.324 -1.407
ENSMUSG00000069601 E029 3.9214939 0.0312378339 0.3469088342 0.87431815 10 69658038 69658223 186 + 0.755 0.597 -0.669
ENSMUSG00000069601 E030 0.1667494 0.0355717341 0.5944115627   10 69658224 69658465 242 + 0.112 0.000 -13.455
ENSMUSG00000069601 E031 0.3274400 0.0257975737 0.2680516485   10 69658908 69658931 24 + 0.201 0.000 -14.362
ENSMUSG00000069601 E032 1.1526198 0.0964390073 0.9529504085 1.00000000 10 69660148 69660246 99 + 0.337 0.324 -0.086
ENSMUSG00000069601 E033 0.0000000       10 69660247 69660911 665 +      
ENSMUSG00000069601 E034 3.9413019 0.0172592309 0.8011441265 0.98165184 10 69685936 69686034 99 + 0.708 0.671 -0.157
ENSMUSG00000069601 E035 0.1659033 0.0345408760 0.3947101960   10 69686035 69686557 523 + 0.000 0.136 13.043
ENSMUSG00000069601 E036 0.0000000       10 69694050 69694351 302 +      
ENSMUSG00000069601 E037 4.2639596 0.0043198938 0.0259938673 0.36156511 10 69703215 69703313 99 + 0.837 0.507 -1.407
ENSMUSG00000069601 E038 0.1667494 0.0355717341 0.5944115627   10 69703314 69706831 3518 + 0.112 0.000 -13.455
ENSMUSG00000069601 E039 10.1815729 0.0019525028 0.0544081121 0.51143353 10 69706832 69707029 198 + 1.125 0.923 -0.741
ENSMUSG00000069601 E040 0.0000000       10 69707030 69708290 1261 +      
ENSMUSG00000069601 E041 4.6060188 0.0040295132 0.3607254772 0.87535004 10 69710620 69710718 99 + 0.798 0.671 -0.518
ENSMUSG00000069601 E042 4.6105688 0.0041000712 0.5936784301 0.95165770 10 69713660 69713758 99 + 0.777 0.704 -0.299
ENSMUSG00000069601 E043 3.1369477 0.0064255636 0.2448248342 0.80442163 10 69715723 69715821 99 + 0.525 0.704 0.789
ENSMUSG00000069601 E044 5.4387504 0.0066266699 0.8280014912 0.98548395 10 69718191 69718388 198 + 0.818 0.790 -0.111
ENSMUSG00000069601 E045 2.6297420 0.0132277161 0.2994558382 0.84044841 10 69720577 69720675 99 + 0.626 0.454 -0.808
ENSMUSG00000069601 E046 3.6233459 0.0050183830 0.0018681630 0.07561858 10 69720969 69721067 99 + 0.392 0.862 2.095
ENSMUSG00000069601 E047 8.0718499 0.0042392947 0.8395502357 0.98677151 10 69728152 69728349 198 + 0.965 0.942 -0.085
ENSMUSG00000069601 E048 5.4413085 0.0035433896 0.0456585286 0.47552357 10 69729275 69729373 99 + 0.906 0.635 -1.086
ENSMUSG00000069601 E049 4.5959890 0.0051478556 0.1963320295 0.77147870 10 69733871 69733960 90 + 0.818 0.635 -0.749
ENSMUSG00000069601 E050 2.3085838 0.0075230709 0.0764135908 0.58710222 10 69733961 69733969 9 + 0.626 0.324 -1.545
ENSMUSG00000069601 E051 5.4497218 0.0357488030 0.1538203067 0.72235646 10 69734058 69734156 99 + 0.890 0.671 -0.873
ENSMUSG00000069601 E052 1.3272831 0.3024100896 0.4854608376 0.92538469 10 69734824 69734840 17 + 0.442 0.240 -1.263
ENSMUSG00000069601 E053 4.7771546 0.0041158659 0.9590082818 1.00000000 10 69734841 69734898 58 + 0.756 0.763 0.030
ENSMUSG00000069601 E054 3.2986180 0.0062556043 0.6993310711 0.96475394 10 69734899 69734919 21 + 0.655 0.597 -0.255
ENSMUSG00000069601 E055 5.6006135 0.0034016469 0.2901909124 0.83665585 10 69740028 69740100 73 + 0.873 0.735 -0.545
ENSMUSG00000069601 E056 1.6472690 0.0099695703 0.3595041553 0.87517695 10 69740278 69740340 63 + 0.485 0.324 -0.893
ENSMUSG00000069601 E057 0.0000000       10 69750695 69750734 40 +      
ENSMUSG00000069601 E058 0.1613534 0.0340373044 0.5959013816   10 69756268 69756321 54 + 0.112 0.000 -13.458
ENSMUSG00000069601 E059 0.0000000       10 69761325 69761361 37 +      
ENSMUSG00000069601 E060 0.6607752 0.1119433158 0.8315527805   10 69761362 69761602 241 + 0.201 0.240 0.328
ENSMUSG00000069601 E061 0.3324796 0.0289858995 0.8697483169   10 69761603 69761634 32 + 0.112 0.136 0.329
ENSMUSG00000069601 E062 0.4940258 0.0220188957 0.4436635035   10 69761635 69761648 14 + 0.112 0.240 1.329
ENSMUSG00000069601 E063 1.3179932 0.0115082444 0.0006457175 0.03464956 10 69761649 69761783 135 + 0.000 0.597 15.668
ENSMUSG00000069601 E064 0.6592664 0.0183762368 0.2186112938   10 69761784 69761909 126 + 0.112 0.324 1.914
ENSMUSG00000069601 E065 0.1667494 0.0355717341 0.5944115627   10 69761910 69761962 53 + 0.112 0.000 -13.455
ENSMUSG00000069601 E066 0.4896490 0.0219633906 0.7065279155   10 69761963 69762021 59 + 0.201 0.136 -0.671
ENSMUSG00000069601 E067 0.0000000       10 69762022 69762168 147 +      
ENSMUSG00000069601 E068 8.0442821 0.0023986292 0.9324878577 0.99930331 10 69763525 69763648 124 + 0.951 0.960 0.034
ENSMUSG00000069601 E069 0.0000000       10 69765277 69765288 12 +      
ENSMUSG00000069601 E070 3.1140635 0.0091091991 0.2460226597 0.80442163 10 69768224 69768238 15 + 0.525 0.704 0.789
ENSMUSG00000069601 E071 3.9324883 0.0107320833 0.8826841122 0.99265898 10 69768239 69768326 88 + 0.683 0.704 0.088
ENSMUSG00000069601 E072 4.7616593 0.0038788138 0.9555062082 1.00000000 10 69786782 69786888 107 + 0.756 0.763 0.030
ENSMUSG00000069601 E073 0.0000000       10 69789270 69789302 33 +      
ENSMUSG00000069601 E074 0.0000000       10 69789303 69789356 54 +      
ENSMUSG00000069601 E075 8.8667868 0.0021488161 0.9832718607 1.00000000 10 69791756 69791980 225 + 0.991 0.994 0.008
ENSMUSG00000069601 E076 8.0614395 0.0024026770 0.7159070690 0.96912015 10 69794748 69794902 155 + 0.936 0.977 0.153
ENSMUSG00000069601 E077 5.7487115 0.0253205469 0.3028261018 0.84356127 10 69809552 69809628 77 + 0.756 0.903 0.577
ENSMUSG00000069601 E078 8.0597732 0.0474119675 0.7457469664 0.97314738 10 69809629 69809763 135 + 0.978 0.923 -0.208
ENSMUSG00000069601 E079 10.3497948 0.0019971612 0.6292450554 0.95595792 10 69811878 69812085 208 + 1.074 1.025 -0.179
ENSMUSG00000069601 E080 5.0749491 0.0273552729 0.9067229141 0.99563225 10 69813543 69813639 97 + 0.777 0.790 0.050
ENSMUSG00000069601 E081 7.5668587 0.0467210049 0.7319253552 0.97196762 10 69814301 69814529 229 + 0.905 0.960 0.207
ENSMUSG00000069601 E082 2.3155860 0.0620948139 0.7409104191 0.97290014 10 69815148 69815191 44 + 0.485 0.554 0.331
ENSMUSG00000069601 E083 5.4437896 0.0035602229 0.2465979312 0.80442163 10 69815192 69815273 82 + 0.733 0.883 0.593
ENSMUSG00000069601 E084 6.4054795 0.0030447108 0.0328246677 0.40805841 10 69816102 69816152 51 + 0.733 0.994 1.008
ENSMUSG00000069601 E085 8.5472151 0.0022376450 0.5883463724 0.95124454 10 69816153 69816224 72 + 0.951 1.010 0.219
ENSMUSG00000069601 E086 0.0000000       10 69816654 69816680 27 +      
ENSMUSG00000069601 E087 4.7654974 0.0039182942 0.2881077851 0.83443547 10 69817946 69817953 8 + 0.818 0.671 -0.596
ENSMUSG00000069601 E088 7.3970346 0.0264351640 0.4599387080 0.91682762 10 69817954 69817991 38 + 0.964 0.862 -0.388
ENSMUSG00000069601 E089 5.9261549 0.0031765912 0.0941520440 0.62900916 10 69817992 69818027 36 + 0.921 0.704 -0.855
ENSMUSG00000069601 E090 0.0000000       10 69818028 69818132 105 +      
ENSMUSG00000069601 E091 0.0000000       10 69821913 69821918 6 +      
ENSMUSG00000069601 E092 1.4867809 0.1619613421 0.2571310537 0.81097845 10 69821919 69823678 1760 + 0.275 0.507 1.327
ENSMUSG00000069601 E093 1.1571500 0.0854844374 0.9472631690 1.00000000 10 69823679 69824462 784 + 0.337 0.324 -0.085
ENSMUSG00000069601 E094 1.1502314 0.0361024590 0.4097374254 0.89590796 10 69824463 69825764 1302 + 0.392 0.240 -0.993
ENSMUSG00000069601 E095 3.1244800 0.0055848117 0.8472680100 0.98686918 10 69825765 69827920 2156 + 0.626 0.597 -0.130
ENSMUSG00000069601 E096 0.6454136 0.6487899912 0.3039971372   10 69827921 69828305 385 + 0.335 0.000 -14.617
ENSMUSG00000069601 E097 2.6252113 0.0079264231 0.6529103517 0.95668705 10 69828306 69829374 1069 + 0.525 0.597 0.330
ENSMUSG00000069601 E098 0.3276328 0.0281500841 0.8682821372   10 69829375 69829592 218 + 0.112 0.136 0.329
ENSMUSG00000069601 E099 0.6497904 0.3361743895 0.6096038961   10 69830133 69830201 69 + 0.273 0.136 -1.247
ENSMUSG00000069601 E100 6.7339555 0.0030706728 0.3207887165 0.85626216 10 69830202 69830276 75 + 0.936 0.815 -0.464
ENSMUSG00000069601 E101 1.4807125 0.0105199117 0.9938791649 1.00000000 10 69830277 69831070 794 + 0.392 0.394 0.008
ENSMUSG00000069601 E102 10.6883085 0.0020263866 0.6527423671 0.95668705 10 69833925 69834056 132 + 1.085 1.040 -0.164
ENSMUSG00000069601 E103 11.5576575 0.0194290666 0.2434023645 0.80442163 10 69835185 69835328 144 + 1.029 1.166 0.494
ENSMUSG00000069601 E104 0.8216586 0.0179286003 0.4889450619 0.92579672 10 69835329 69835533 205 + 0.201 0.324 0.914
ENSMUSG00000069601 E105 13.6753417 0.0032098634 0.4948438977 0.92674629 10 69837753 69838061 309 + 1.134 1.197 0.225
ENSMUSG00000069601 E106 8.2168680 0.0052507564 0.7505853068 0.97541370 10 69838062 69838340 279 + 0.978 0.942 -0.136
ENSMUSG00000069601 E107 7.5426158 0.0398907695 0.3196169354 0.85538296 10 69838341 69838431 91 + 0.991 0.839 -0.574
ENSMUSG00000069601 E108 38.9807242 0.0005207099 0.0453345965 0.47435072 10 69840440 69840821 382 + 1.548 1.656 0.366
ENSMUSG00000069601 E109 0.4992290 0.2918223942 0.7598450892   10 69842630 69842632 3 + 0.201 0.136 -0.672
ENSMUSG00000069601 E110 0.6601124 0.0192790232 0.8231993140   10 69842633 69842683 51 + 0.201 0.240 0.329
ENSMUSG00000069601 E111 0.0000000       10 69844608 69844694 87 +      
ENSMUSG00000069601 E112 0.0000000       10 69849802 69849885 84 +      
ENSMUSG00000069601 E113 0.0000000       10 69850020 69850076 57 +      
ENSMUSG00000069601 E114 1.8087409 0.3064165404 0.6382706078 0.95668705 10 69851398 69851400 3 + 0.393 0.506 0.583
ENSMUSG00000069601 E115 7.8829777 0.0024446701 0.1751784664 0.75672932 10 69851401 69851483 83 + 0.873 1.025 0.570
ENSMUSG00000069601 E116 0.1659033 0.0345408760 0.3947101960   10 69851484 69851635 152 + 0.000 0.136 13.043
ENSMUSG00000069601 E117 95.7340718 0.0011622138 0.3875018457 0.88612996 10 69859662 69863268 3607 + 1.969 1.999 0.101

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