ENSMUSG00000091586

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000165999 ENSMUSG00000091586 Control shVgll3 Cyp4f17 protein_coding protein_coding 5.286865 4.408317 6.165413 0.05496002 0.4822196 0.4830387 1.8762098 0.9945349 2.7578846 0.19770588 0.02848071 1.4622562 0.33926667 0.22513333 0.45340000 0.22826667 1.346834e-01 1.788193e-06 FALSE TRUE
ENSMUST00000235238 ENSMUSG00000091586 Control shVgll3 Cyp4f17 protein_coding protein_coding 5.286865 4.408317 6.165413 0.05496002 0.4822196 0.4830387 0.7631654 0.2715054 1.2548253 0.27150543 0.64333796 2.1677035 0.12673333 0.06290000 0.19056667 0.12766667 9.706657e-01 1.788193e-06 FALSE FALSE
ENSMUST00000236129 ENSMUSG00000091586 Control shVgll3 Cyp4f17 protein_coding protein_coding_CDS_not_defined 5.286865 4.408317 6.165413 0.05496002 0.4822196 0.4830387 0.2725307 0.1328585 0.4122029 0.13285846 0.24534810 1.5633499 0.05018333 0.02946667 0.07090000 0.04143333 9.706657e-01 1.788193e-06 FALSE FALSE
MSTRG.9985.2 ENSMUSG00000091586 Control shVgll3 Cyp4f17 protein_coding   5.286865 4.408317 6.165413 0.05496002 0.4822196 0.4830387 0.6799406 1.3598813 0.0000000 0.42279968 0.00000000 -7.0979071 0.15436667 0.30873333 0.00000000 -0.30873333 1.788193e-06 1.788193e-06 FALSE TRUE
MSTRG.9985.6 ENSMUSG00000091586 Control shVgll3 Cyp4f17 protein_coding   5.286865 4.408317 6.165413 0.05496002 0.4822196 0.4830387 1.0060330 0.9652216 1.0468445 0.01683698 0.04902899 0.1159612 0.19603333 0.21903333 0.17303333 -0.04600000 9.706657e-01 1.788193e-06 FALSE TRUE
MSTRG.9985.7 ENSMUSG00000091586 Control shVgll3 Cyp4f17 protein_coding   5.286865 4.408317 6.165413 0.05496002 0.4822196 0.4830387 0.6441961 0.6843157 0.6040765 0.11988822 0.14746649 -0.1771736 0.12506667 0.15470000 0.09543333 -0.05926667 8.017449e-01 1.788193e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000091586 E001 0.0000000       17 32725024 32725138 115 +      
ENSMUSG00000091586 E002 3.2873456 0.0056525977 0.106596313 0.6454263 17 32725436 32725491 56 + 0.500 0.744 1.073
ENSMUSG00000091586 E003 8.0481195 0.0028000146 0.559634740 0.9411047 17 32725492 32725552 61 + 0.925 0.989 0.239
ENSMUSG00000091586 E004 19.5760165 0.0358396525 0.079700401 0.5946016 17 32725868 32726066 199 + 1.394 1.197 -0.692
ENSMUSG00000091586 E005 0.3314605 0.2839778221 0.228037666   17 32726067 32726082 16 + 0.000 0.231 10.985
ENSMUSG00000091586 E006 0.3326527 0.0280927379 0.926728726   17 32728278 32728402 125 + 0.117 0.130 0.179
ENSMUSG00000091586 E007 17.0864199 0.0110681977 0.647288821 0.9566871 17 32736868 32737012 145 + 1.277 1.233 -0.155
ENSMUSG00000091586 E008 5.4326529 0.0824707597 0.891444272 0.9951869 17 32739198 32739336 139 + 0.818 0.796 -0.088
ENSMUSG00000091586 E009 9.8649623 0.0411475049 0.439982381 0.9113914 17 32739337 32739390 54 + 0.985 1.086 0.369
ENSMUSG00000091586 E010 21.1029700 0.0017914932 0.587792176 0.9512445 17 32739477 32739604 128 + 1.324 1.363 0.134
ENSMUSG00000091586 E011 14.9830607 0.0072500899 0.137415425 0.6993652 17 32741092 32741213 122 + 1.263 1.122 -0.498
ENSMUSG00000091586 E012 19.2655044 0.0010908484 0.548313529 0.9370703 17 32741214 32741847 634 + 1.284 1.329 0.155
ENSMUSG00000091586 E013 47.7388501 0.0004824319 0.782118588 0.9790322 17 32741848 32742975 1128 + 1.681 1.693 0.040
ENSMUSG00000091586 E014 37.0274762 0.0006479096 0.714701646 0.9686687 17 32742976 32743246 271 + 1.570 1.589 0.064
ENSMUSG00000091586 E015 16.7937884 0.0012740977 0.959071358 1.0000000 17 32743553 32743619 67 + 1.248 1.251 0.010
ENSMUSG00000091586 E016 14.2962627 0.0013816984 0.359260614 0.8751770 17 32743809 32743938 130 + 1.146 1.224 0.279
ENSMUSG00000091586 E017 0.1667494 0.0345486888 0.545882657   17 32746777 32746814 38 + 0.117 0.000 -11.183
ENSMUSG00000091586 E018 17.6186097 0.0258756797 0.352686484 0.8751770 17 32746815 32746948 134 + 1.225 1.314 0.315
ENSMUSG00000091586 E019 2.3038405 0.0091298900 0.169785650 0.7479066 17 32746949 32747020 72 + 0.612 0.380 -1.142
ENSMUSG00000091586 E020 17.0918113 0.0012023190 0.262643182 0.8143369 17 32747021 32747085 65 + 1.298 1.206 -0.325
ENSMUSG00000091586 E021 15.6518226 0.0021214926 0.480034360 0.9232799 17 32747250 32747332 83 + 1.248 1.186 -0.218
ENSMUSG00000091586 E022 2.7983887 0.0075216119 0.000388214 0.0234089 17 32747333 32747337 5 + 0.209 0.796 3.086
ENSMUSG00000091586 E023 129.4547841 0.0002418865 0.805382870 0.9821080 17 32747691 32749125 1435 + 2.118 2.110 -0.026

Help

Please Click HERE to learn more details about the results from DEXseq.