ENSMUSG00000097915

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000229239 ENSMUSG00000097915 Control shVgll3 A330009N23Rik lncRNA lncRNA 1.268013 1.338572 1.197454 0.008135652 0.1348766 -0.1594651 0.3798310 0.2651731 0.4944888 0.2651731 0.27660513 0.8744824 0.29153333 0.1980333 0.3850333 0.1870000 0.97066567 0.01882269 FALSE FALSE
ENSMUST00000241551 ENSMUSG00000097915 Control shVgll3 A330009N23Rik lncRNA lncRNA 1.268013 1.338572 1.197454 0.008135652 0.1348766 -0.1594651 0.4658857 0.6956522 0.2361193 0.1495711 0.06541368 -1.5195997 0.36160000 0.5186000 0.2046000 -0.3140000 0.53545429 0.01882269   FALSE
ENSMUST00000241761 ENSMUSG00000097915 Control shVgll3 A330009N23Rik lncRNA lncRNA 1.268013 1.338572 1.197454 0.008135652 0.1348766 -0.1594651 0.1031454 0.0000000 0.2062909 0.0000000 0.04433036 4.4349009 0.08431667 0.0000000 0.1686333 0.1686333 0.01882269 0.01882269   FALSE
ENSMUST00000245167 ENSMUSG00000097915 Control shVgll3 A330009N23Rik lncRNA lncRNA 1.268013 1.338572 1.197454 0.008135652 0.1348766 -0.1594651 0.3097332 0.3777470 0.2417193 0.2241209 0.24171932 -0.6232997 0.25381667 0.2833667 0.2242667 -0.0591000 0.97066567 0.01882269 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000097915 E001 0.3328359 0.029281140 0.257983624   15 101118839 101119071 233 - 0.208 0.000 -10.726
ENSMUSG00000097915 E002 0.0000000       15 101119072 101119074 3 -      
ENSMUSG00000097915 E003 0.0000000       15 101119075 101119075 1 -      
ENSMUSG00000097915 E004 7.0627782 0.003383014 0.116267493 0.66203098 15 101119076 101120070 995 - 0.835 0.975 0.532
ENSMUSG00000097915 E005 0.6609387 0.019460271 0.055528370   15 101120752 101121361 610 - 0.348 0.000 -12.589
ENSMUSG00000097915 E006 3.6143994 0.036115875 0.082647447 0.60353553 15 101121362 101121514 153 - 0.539 0.773 1.004
ENSMUSG00000097915 E007 0.1660866 0.036912648 0.584387873   15 101121758 101122002 245 - 0.116 0.000 -10.830
ENSMUSG00000097915 E008 1.6471654 0.031185504 0.100926305 0.63852673 15 101122440 101122492 53 - 0.539 0.231 -1.806
ENSMUSG00000097915 E009 10.6644067 0.002943554 0.001521824 0.06743295 15 101122493 101122658 166 - 1.180 0.886 -1.081
ENSMUSG00000097915 E010 0.8223215 0.076696212 0.541602734 0.93688185 15 101122848 101122854 7 - 0.208 0.313 0.778
ENSMUSG00000097915 E011 5.5905326 0.004166948 0.013232682 0.25232082 15 101122855 101123080 226 - 0.671 0.942 1.069

Help

Please Click HERE to learn more details about the results from DEXseq.