ENSMUSG00000118365

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENSMUST00000235622 ENSMUSG00000118365 Control shVgll3   lncRNA lncRNA 16.60324 23.4285 9.77799 1.79067 1.023252 -1.259796 1.385035 1.477847 1.2922223 0.8976432 0.3367245 -0.1922509 0.09405000 0.0595000 0.12860000 0.06910000 0.97066567 0.02841358   FALSE
MSTRG.11103.3 ENSMUSG00000118365 Control shVgll3   lncRNA   16.60324 23.4285 9.77799 1.79067 1.023252 -1.259796 1.758180 2.573942 0.9424191 0.3753633 0.2028158 -1.4399052 0.10456667 0.1128667 0.09626667 -0.01660000 0.97473090 0.02841358   FALSE
MSTRG.11103.4 ENSMUSG00000118365 Control shVgll3   lncRNA   16.60324 23.4285 9.77799 1.79067 1.023252 -1.259796 2.910791 3.470817 2.3507658 0.5323071 0.5046417 -0.5601710 0.19418333 0.1466667 0.24170000 0.09503333 0.70941246 0.02841358   FALSE
MSTRG.11103.5 ENSMUSG00000118365 Control shVgll3   lncRNA   16.60324 23.4285 9.77799 1.79067 1.023252 -1.259796 1.349790 1.225414 1.4741655 1.2254137 0.1642017 0.2646577 0.09891667 0.0455000 0.15233333 0.10683333 0.60617113 0.02841358   FALSE
MSTRG.11103.6 ENSMUSG00000118365 Control shVgll3   lncRNA   16.60324 23.4285 9.77799 1.79067 1.023252 -1.259796 8.489855 13.709034 3.2706760 0.5869871 0.2064436 -2.0641139 0.46538333 0.5915667 0.33920000 -0.25236667 0.02841358 0.02841358   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand shVgll3 Control log2fold_Control_shVgll3
ENSMUSG00000118365 E001 1.4787199 0.2263098086 0.249181186 0.80530945 18 52661733 52661818 86 + 0.555 0.263 -1.636
ENSMUSG00000118365 E002 0.6551864 0.0213448250 0.063524158   18 52692111 52692122 12 + 0.407 0.082 -2.893
ENSMUSG00000118365 E003 6.7507891 0.0559795332 0.454749435 0.91401744 18 52692123 52692255 133 + 0.943 0.808 -0.518
ENSMUSG00000118365 E004 30.3509243 0.0263991722 0.090808197 0.62188142 18 52692256 52692404 149 + 1.572 1.395 -0.607
ENSMUSG00000118365 E005 14.6681034 0.0081014043 0.286390199 0.83307701 18 52692807 52692862 56 + 1.232 1.118 -0.404
ENSMUSG00000118365 E006 20.9046334 0.0009724063 0.002452634 0.08928554 18 52695689 52695879 191 + 1.111 1.357 0.869
ENSMUSG00000118365 E007 15.9543782 0.0201916664 0.815481751 0.98409453 18 52696728 52696735 8 + 1.175 1.194 0.067
ENSMUSG00000118365 E008 86.9869126 0.0003440621 0.042488042 0.46217252 18 52696736 52696946 211 + 1.863 1.917 0.180
ENSMUSG00000118365 E009 1.1476933 0.0147852681 0.962211377 1.00000000 18 52701113 52701165 53 + 0.309 0.311 0.014
ENSMUSG00000118365 E010 42.4548853 0.0005095485 0.453392549 0.91386755 18 52710154 52710403 250 + 1.633 1.580 -0.180

Help

Please Click HERE to learn more details about the results from DEXseq.